Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06410 ATGACCATCAGATCAACAAGTTCGAAGCGGAAGCTTCACTTGGAACCAGTACCATCGCACATTATTAGCAAGAAGCTCCGGTCGAAGCTGCCTCGCCGGCGAAGAAGCCAGATCTCTCCGGTGCTTCTTATTTCGCCGATATTCAAAGTTTCCGGAGAGAATCGTCGTTTATCCGTCGTTTCAGTGGACTCGAGCTCTGGCTCTGACCTCGCCGGCGGTGAAGCTTCGTGTAATTCAAGCAGAGCTTCCACCGTATTCGCTCGCAAGGGAAGGTCGAACTCGAGGAACGAATTATCAGAAGAATTTGAAGGCGTTCGGAAGGCTGAGTGTGTGGATTTCTTGAGAAATCGGAGATTTCAGAAGCGGAGTGAAAATGAACCGGAGGTGTCACAGTCTTCGTGTGTGGACTCCAATACTGGCGTTCAAGAACGCAGCAGAAGCTTAATTTTGAAGTTCAGGAGCGGAAAAGAAAGTAAGAATCCGAAAGAAAATGACGAAGTTTCGGAAGCTTGCACGAAATCGGAGATTACATTCCCGGAGCAATTTTCCGTTGAGAATTCAAAGTCCGGACAAGGAAATTTGAAAATCTCGTCGGAGATAACTCGAAACGACGTCGTTGCAGTTAGCTCTGGTGTTCGCGACACGTCGTTTGGAGAGGAAAAGACCAAATGCAGGGAAAACAGAGCATCGGAATCCGATTTCTCTCAAGGTTCAAGGAACCACGGCAACTGCGCGGATTTGATAGCGCAATCGATGATAAATCAAGGTTCAGATAATTCCGGCGCCGATTCCGATCTCGCTTGCAGTGAGCAATTGCTATTCTTGCACTGCGACGACGAGGACGAATCAGAGTACTACTCCAGCCAGGGAACTGTGTTCTCTGACCTTCACTCCGAGATTTTCGGCGAATGCTCAGAGCTAGAGCTTTCAGATTATACTCCGTCTCTGTTTGTTGATTCTGGAAGCCAGTTTTCGCAAGGATCAGTTGCAGAAAATCCTTCGCCAACTTACGTACAGTTCCTTCAGTACCGCAAGGAATTCTCGACGCTAGCTTGTCCAGTTAATGCTTCAACCATCGAAGAAGATGTTTCTCTTCATTTCAAATTCGAAGATTTGGATGACGAAGACAGCTACCAGATGCTAAGGAAGAGGGAAAGGAGGCAAGTTTTCCTGTGGAATTATGCTGAACGGTATTTCTCTACCACGGATTTCGGCGAGCTCGTGCTTCAGCAACGCTCGCAAATGGTTCAGTGGATCGTTGAGCAATCTTGCCGTAAACAGCTTCGGCAAGAGACGTTGTTTCTTGGAATCAGCCTACTTGACCGTTTCCTGAGCAAAGGATACTTCAAAGCCAGACGAAACCTTCATATTGTTGGAATAGCCTGCCTCACGTTAGCCACAAGGATCGAAGAAAACCAGCCATATAACAGAGTGGGGCAAAAGTATTTCTACATAGGAAGCAGTGTGTACAGTAGATGCGAGGTGGTAGCTATGGAATGGATGGTGCAGGAGGTGCTCGAGTTCCAGTGTTTTCTGCCTACCATCTACAACTTCTTGTGGTTCTACCTAAAAGCTGCCAATGCTGATGCAGATGTTGAGAAGAGGGCCAAGTACCTAGCAGTTCGGGCTCTGTCGGCTCATGAGCAACTGTGCTACTGGCCCTCAACGGTTGCTGCTGCACTTGTAATATTGGCTTGTCTAGAACTCAATCAAAACGCATTCCACAAAGTCATAGGGATCCACATTAGATCAAAGGATGAGAATTTGCATGCATGCATAGAGAGTCTGGAATGGTTATTACGCTATCTATGA 1812 0.4713 MTIRSTSSKRKLHLEPVPSHIISKKLRSKLPRRRRSQISPVLLISPIFKVSGENRRLSVVSVDSSSGSDLAGGEASCNSSRASTVFARKGRSNSRNELSEEFEGVRKAECVDFLRNRRFQKRSENEPEVSQSSCVDSNTGVQERSRSLILKFRSGKESKNPKENDEVSEACTKSEITFPEQFSVENSKSGQGNLKISSEITRNDVVAVSSGVRDTSFGEEKTKCRENRASESDFSQGSRNHGNCADLIAQSMINQGSDNSGADSDLACSEQLLFLHCDDEDESEYYSSQGTVFSDLHSEIFGECSELELSDYTPSLFVDSGSQFSQGSVAENPSPTYVQFLQYRKEFSTLACPVNASTIEEDVSLHFKFEDLDDEDSYQMLRKRERRQVFLWNYAERYFSTTDFGELVLQQRSQMVQWIVEQSCRKQLRQETLFLGISLLDRFLSKGYFKARRNLHIVGIACLTLATRIEENQPYNRVGQKYFYIGSSVYSRCEVVAMEWMVQEVLEFQCFLPTIYNFLWFYLKAANADADVEKRAKYLAVRALSAHEQLCYWPSTVAAALVILACLELNQNAFHKVIGIHIRSKDENLHACIESLEWLLRYL. 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06410 603 SMART cyclin_7 517 597 IPR013763 -
Seca9g06410 603 SMART cyclin_7 417 504 IPR013763 -
Seca9g06410 603 MobiDBLite consensus disorder prediction 126 140 - -
Seca9g06410 603 Pfam Cyclin, C-terminal domain 513 597 IPR004367 -
Seca9g06410 603 Gene3D - 505 603 - -
Seca9g06410 603 SUPERFAMILY Cyclin-like 371 509 IPR036915 -
Seca9g06410 603 MobiDBLite consensus disorder prediction 121 140 - -
Seca9g06410 603 Pfam Cyclin, N-terminal domain 406 509 IPR006671 -
Seca9g06410 603 PIRSF Cyclin_A_B_D_E 374 601 IPR046965 GO:0016538|GO:0044772
Seca9g06410 603 PIRSF Cyclin_A_B_D_E 64 270 IPR046965 GO:0016538|GO:0044772
Seca9g06410 603 SUPERFAMILY Cyclin-like 513 600 IPR036915 -
Seca9g06410 603 CDD CYCLIN_SDS-like_rpt2 513 600 - -
Seca9g06410 603 ProSitePatterns Cyclins signature. 412 443 IPR006671 -
Seca9g06410 603 PANTHER CYCLINS 354 595 IPR039361 -
Seca9g06410 603 Gene3D - 401 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06410 Seca-Chr9 181579689 181585542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06410 376 572 Core Cell Cycle Gene Families AT5G11300 32.178 8.03e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06410 K21777 - gmx:100817658 724.931