LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g06406	ATGGAGAAACCCCAACTGGTTTTCCTTGTTGTGTTGTTTTCTGTGATGTTTCTGAATGCATGGTCTCAGGATGATGTTGTGATGGAGGCGCTGAAGAAGACGATCATCTTCCCTCCACAGAGTGATCTCAAATGGTCAGACCCAGATGTGTGTCGATGGAGTAACGTTCAGTGCAATTCTGGGAAGAGGGTCTCTGCTATTAAAATTGGAGGACTTAAACTTCAAGGCTCTCTGCCTAAAGAACTTGTGCAGCTGTCTGAGTTAAAGCGTTTTGAGTGCATGATAAATAATCTATCTGGGCCTTTCCCTTACATGCCAAAGACATTGGAGAATCTGATTATTCATGACAACAATTTCAGCTCCATACCCAGTGATTTCTTCACCAGCATGACCAATTTGCGAGAGGTGAGGATTGACTATAACCCTTTCCCTCAGTGGCAGGTTCCTGTTAGCCTCAAGGACTCTGTGTCTCTTCAGAATTTCTCTGCCATGAACGCTGGTTTTGTTGGGGAAATCCCTGATTTTTTTGGAAAAGATGGTCCTTTCCCAGGTTTGATGTTCTTGGGTTTGTGTTTTAATTCTTTTGAAGGTGGGTTGCCTGCAAGCTTTTCTGGGAGTTCTATAGTGTATCTTTTGGTGAATGGTCAGAAAAGTAACTCTAAACTCAATGGTACCCTTGATGTGTTACAGAACATGACATCCCTCCAACAAATTTGGGTACATGGTAATTCATTCACAGGTCCTATACCTGACTTGTCAAACCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCACCTGACTGGTGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTGAAGGTTGTGAACTTGACCAACAATGATCTTCAAGGGTCCCCTCCCAAGTTCAAAGATGGGGTCAGGGTTGATAATGATATGGAAAGGGGGATCAATAGATTTTGCACAAAGGTGGTTGGTCAGCCATGTAGTCCCCTTGTAAATGCTTTGTTGTCTGTTGTTGAACCTTGGGGTTATCCTCTAAAACTTGCTGATAGTTGGCAGGGTAATGACCCTTGTAAAGATTGGATGGGGATTGTTTGCTCTGGTGGTAACATTTCCATTATTAACTTGCAGAACATGGGTCTCTCTGGCAATATTTCTCCTAGTTTCGCAAGCCTTACATCTGTGACAAAGTTGTTTCTTGCTAGCAATGGTCTCACCGGTACTATCCCAAGTGAACTTACTAGTATGCCTCTTTTGAAAGAGCTTGATGTTTCGAATAATAAGTTATATGGTCAGGTACCTTCCTTCCGTGAAGGTGTGGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAACCTCAAGCACCGCCTGGCTCGAATCCTGGAGGTAATACTAATGATAAGAAACATAATGCTGGAGCCATTGTTGGCATTGTGGTGGGGGCTGCCTGTTTACTTGGTGTAGGGGTTCTGGTATTTGTTATGTATGGTAGAAAACATAAGCGTGCTAGAAAAGTTCAAAGTCCAAATGCAATTGTGGTACATCCTCGTCATTCTGGAGATGGAAATGGTTTGAAGATAAGTGTTGCTGCTGTTGCAGGAGCTGGTGGTGGTGGAGGTGGAGGAACTAGTACTGGTGCATTTAGCCCAACAAGTAGTGTTCAAACTGTGGAAGCTGGTAACATGGTAATTTCAATTCAAGTTTTGAGAGAAGTTACAAACAATTTCAGTGAAGAAAACATATTGGGGAAGGGTGGTTTCGGCACCGTATATAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGGTGGGTGAGAAGGGGCTGAGTGAGTTCATGTCTGAAATTGCTGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCATTGTTGGGCCATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGAACTCTTAGTAAACATTTGTTCAATTGGAAAGAAGAAGGGTTGCAACCATTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTTATCCACAGGGATCTTAAGCCATCAAACATCTTGCTTGGAGATGATATGCGTGCCAAAGTATCAGATTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAAGTCTCATTCGAGACTAGACTTGCAGGAACTTTTGGATATCTGGCACCAGAATATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTGTATAGCTATGGAGTGATTCTTATGGAGATGATAACTGGAAAGAAAGCAATTGACAATAGCCAATCAGAAGAGAACATCCACCTTGTTACATGGTTCCGCAGGATGCTACTAAACAAAGATTCATTCAGAAAGGTCATTGACCCAACAATGGATGTTGATGAGGAAGCCTTAGAGAGTTTAAGGACAGTTGCTGAGTTGGCTGGCCATTGTAGTGCAAGGGAGCCCTATCAGCGTCCTGATATGGGTCATGTGGTGAATGTGTTAGCACCACTTGTTGAGATCTGGAAGCCTGCAGAACCTGATGCTGATGATATTTATGGGATTGACTTGGACATGACATTGCCTCAAGCACTCACCAAGTGGCAAGCTTTTGAAGGAAGGAGCACCGTTGATCTCTCATCATCTTCTTCATCAATCCTAACAAGTGGAGATAATACACAGTCAAGCATTCCAACCCGACCTTCTGGATTTGCAGCTTCCTTTACTTCTTCTGATGGAAGATGA	2793	0.4314	MEKPQLVFLVVLFSVMFLNAWSQDDVVMEALKKTIIFPPQSDLKWSDPDVCRWSNVQCNSGKRVSAIKIGGLKLQGSLPKELVQLSELKRFECMINNLSGPFPYMPKTLENLIIHDNNFSSIPSDFFTSMTNLREVRIDYNPFPQWQVPVSLKDSVSLQNFSAMNAGFVGEIPDFFGKDGPFPGLMFLGLCFNSFEGGLPASFSGSSIVYLLVNGQKSNSKLNGTLDVLQNMTSLQQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNHLTGVVPPSLTALPALKVVNLTNNDLQGSPPKFKDGVRVDNDMERGINRFCTKVVGQPCSPLVNALLSVVEPWGYPLKLADSWQGNDPCKDWMGIVCSGGNISIINLQNMGLSGNISPSFASLTSVTKLFLASNGLTGTIPSELTSMPLLKELDVSNNKLYGQVPSFREGVVVKTGGNPDIGKDKPQAPPGSNPGGNTNDKKHNAGAIVGIVVGAACLLGVGVLVFVMYGRKHKRARKVQSPNAIVVHPRHSGDGNGLKISVAAVAGAGGGGGGGTSTGAFSPTSSVQTVEAGNMVISIQVLREVTNNFSEENILGKGGFGTVYKGELDDGTKIAVKRMESGMVGEKGLSEFMSEIAVLTKVRHRHLVALLGHCLDGNERLLVYEYMPQGTLSKHLFNWKEEGLQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQVSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGKKAIDNSQSEENIHLVTWFRRMLLNKDSFRKVIDPTMDVDEEALESLRTVAELAGHCSAREPYQRPDMGHVVNVLAPLVEIWKPAEPDADDIYGIDLDMTLPQALTKWQAFEGRSTVDLSSSSSSILTSGDNTQSSIPTRPSGFAASFTSSDGR.	931

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g06406	930	FunFam	Receptor-like kinase TMK4	22	322	-	-
	Seca9g06406	930	Gene3D	Phosphorylase Kinase; domain 1	543	652	-	-
	Seca9g06406	930	FunFam	Leucine-rich repeat receptor-like kinase	327	450	-	-
	Seca9g06406	930	FunFam	receptor protein kinase TMK1	653	870	-	-
	Seca9g06406	930	Gene3D	Ribonuclease Inhibitor	328	451	IPR032675	-
	Seca9g06406	930	ProSitePatterns	Protein kinases ATP-binding region signature.	581	603	IPR017441	GO:0005524
	Seca9g06406	930	Gene3D	Transferase(Phosphotransferase) domain 1	653	864	-	-
	Seca9g06406	930	Pfam	Protein tyrosine and serine/threonine kinase	578	849	IPR001245	GO:0004672\|GO:0006468
	Seca9g06406	930	ProSiteProfiles	Protein kinase domain profile.	575	855	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g06406	930	PANTHER	OSJNBA0070M12.3 PROTEIN	9	930	-	-
	Seca9g06406	930	SMART	serkin_6	575	855	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g06406	930	MobiDBLite	consensus disorder prediction	441	467	-	-
	Seca9g06406	930	CDD	STKc_IRAK	581	854	-	-
	Seca9g06406	930	Gene3D	Ribonuclease Inhibitor	22	323	IPR032675	-
	Seca9g06406	930	SUPERFAMILY	L domain-like	43	431	-	-
	Seca9g06406	930	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	700	712	IPR008271	GO:0004672\|GO:0006468
	Seca9g06406	930	SUPERFAMILY	Protein kinase-like (PK-like)	551	851	IPR011009	-
	Seca9g06406	930	FunFam	receptor protein kinase TMK1	539	652	-	-
	Seca9g06406	930	MobiDBLite	consensus disorder prediction	896	930	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g06406	Seca-Chr9	181524583	181528415	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g06406	66	857	Receptor kinase-like Gene Family	AT5G07280	31.047	3.43e-81	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Seca9g06406		PK_Tyr_Ser-Thr	5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g06406	K00924		-	gmx:100776064	1392.48