Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06405 ATGTCTTTTCCTTGGTCTTTCTTTACATGTCTCTTCCTAATTGTGTGTTTAAGAGTAGAGTTAGCAAATTCTCAGATTTATCGAAAAGTGGGAAATAAACTATTCCCGTACTATACCATTACCGTTGATCCATCTGGGCATGGAAACTTTACTACCATTCAGTCTGCAATTGATTCAGTTCCATCAAACAACAAATATTGGGTTTCCATCAATGTGGTGGCAGGCATATACAGGGAAAAGTTGGTGATTCCTAATGACAAGCCTTACATTATACTGAAAGGACAAGGAGAGAAGAAAACTATTGTTGATTGGGATGATCATGAAAATACCTCAGAGAGCCCTACCTTCACATCCATGGCAAACAATATTGTTGTCAAGTCTATTAGCTTTAGGGATTGTTTGGAACAGAATACATACAATATTGGAAAAAATAACCTGATAAGACCTGCAGTAGCTGCAATGGTAAGCGGTGACAAGTCATACTTCATGAATGTTGGATTCTTTGGTGTGCAAGACACTTTGTGGGATTCTCAAGGAAGACATTACTATAAGTCTTGTACCATCCAAGGTGCTGTTGATTTCATCTTTGGTGCTGCCCAATCTTTATTTGAGGGGTGTTCCATATCTGTTGTTGGTGGTGCTCTTCCTCTTGGATGGCCTGGATATATCACAGCACAAGGGAGAACAAATCCAAAGGACACAAATGGGTTTGTTTTTAAGAATTGCAATGTCTATGGAGATGGTACAACTTACTTGGGAAGGGCATGGAGAGACTATGCAACAGTTCTTTTCTACAATACCAATATGTCTAACATTATACAACCTACTGGTTGGGATCCATGGTATTTTAGTAGACACGAGGATCGCATAACATTTGCAGAGTATGGCAATTCTGGACCAGGTTCTAACATGTCCAAACGAGTGAAATGGATTAAGGAGTTGGATTCATCAACAATTAATTGGATGGCAAGTATTAATTTCATTGACACTGAAGGTTGGGTTAATAACCAACACTTCTTTTGA 1023 0.3871 MSFPWSFFTCLFLIVCLRVELANSQIYRKVGNKLFPYYTITVDPSGHGNFTTIQSAIDSVPSNNKYWVSINVVAGIYREKLVIPNDKPYIILKGQGEKKTIVDWDDHENTSESPTFTSMANNIVVKSISFRDCLEQNTYNIGKNNLIRPAVAAMVSGDKSYFMNVGFFGVQDTLWDSQGRHYYKSCTIQGAVDFIFGAAQSLFEGCSISVVGGALPLGWPGYITAQGRTNPKDTNGFVFKNCNVYGDGTTYLGRAWRDYATVLFYNTNMSNIIQPTGWDPWYFSRHEDRITFAEYGNSGPGSNMSKRVKWIKELDSSTINWMASINFIDTEGWVNNQHFF. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06405 340 ProSitePatterns Pectinesterase signature 2. 188 197 IPR033131 -
Seca9g06405 340 Pfam Pectinesterase 40 328 IPR000070 GO:0030599|GO:0042545
Seca9g06405 340 SUPERFAMILY Pectin lyase-like 36 336 IPR011050 -
Seca9g06405 340 FunFam Pectinesterase 36 338 - -
Seca9g06405 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 335 - -
Seca9g06405 340 Gene3D - 37 339 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06405 Seca-Chr9 181494204 181496781 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06405 3 287 Carbohydrate Esterase AT2G19150 44.863 2.24e-77 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06405 - - gmx:100819252 472.241