Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06401 ATGATGTTTCTAATTCGTTTGTGGTGCTTTGCATGTCTCTTAGTGGGGTTGAGATTAGAAGTAGCAAATGCTCAGTTTTACAGGAAAGTTGGAAATAAAGTCCTTCCTTACTGGACAATATTTGTGGATCCATCAGGGCATGGAAACTTCTCTACCATTCAATCTGCCATTGATTCAGTTCCTTCCAACAACAAGTATTGGGTTTCCATCAAGGTCAAGGCAGGAACCTACAGAGAAAAAGTGAACATTCCTGTTGATAAGCCTTATATCATACTAAAAGGAGAGGGAAAGAGAAGAACTCTTGTTGAATGGGATGACCATGATACAACCTCACAGAGCCCTACCTTCTCAATCATGGCAGATAATATTGTTGTCAAAAGCATGAGCTTTAGGAATTCATACAACAATCCAATAAATAATAAACCGAAGGTGCCAGCAGTGGCTGCAATGGTAAGTGGTGACAAGTCCTATTTTTTCAGAGTTGGCTTCTTTGGTTTGCAAGACACTTTGTGGGATGACAGAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTATTGATTTTATCTTTGGTGCTGGCCAATCTTTGTTTGAGAGGTGTTCCATATCTGTTATTGGTGGTGCCTTAGATCCAGGCCTTCCTGGTTTTATCACAGCACAAGGGAGAGCAAACCCAAAGGATTCAAGTGGGTTTGTTTTCAAGGATTGCCATGTGTTTGGAAATGGTACAACTTACTTGGGAAGGCCTTGGAGAGGGTACTCTAGAGTCCTCTTTTACAAGACCAACATGTCCCACATTGTTCAACCTATTGGTTGGGATGCATGGAATTTCCTTGGACATGAGGATCGCATAACATTTGCAGAGTATGGGAATTTTGGAGGTGGTGCTGACACATCCAAGAGAGTGAGTTGGACTAAGAAGTTGGATTTAACAACAGTTAATATGATGGCAAGTCTGAACTTCATTGACACTCAAGAATGGCTTCAGAACCAACTCTTGTAA 1008 0.4117 MMFLIRLWCFACLLVGLRLEVANAQFYRKVGNKVLPYWTIFVDPSGHGNFSTIQSAIDSVPSNNKYWVSIKVKAGTYREKVNIPVDKPYIILKGEGKRRTLVEWDDHDTTSQSPTFSIMADNIVVKSMSFRNSYNNPINNKPKVPAVAAMVSGDKSYFFRVGFFGLQDTLWDDRGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRANPKDSSGFVFKDCHVFGNGTTYLGRPWRGYSRVLFYKTNMSHIVQPIGWDAWNFLGHEDRITFAEYGNFGGGADTSKRVSWTKKLDLTTVNMMASLNFIDTQEWLQNQLL. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06401 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 331 - -
Seca9g06401 335 Pfam Pectinesterase 41 324 IPR000070 GO:0030599|GO:0042545
Seca9g06401 335 Gene3D - 37 335 IPR012334 -
Seca9g06401 335 FunFam Pectinesterase 36 334 - -
Seca9g06401 335 SUPERFAMILY Pectin lyase-like 37 331 IPR011050 -
Seca9g06401 335 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06401 Seca-Chr9 181353949 181357722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06401 5 283 Carbohydrate Esterase AT2G19150 45.423 5.90e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06401 - - gmx:100819252 545.043