Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06390 ATGGTGACTCCAAACTTGAACCTGGAATCTGAAAACAATATAGAAGTCAGCAGCCAAGTAGGTTGCAATGTATCCTCTCAAGAAACATCCCATGATCTTCTTACCAAGAACAGCACAACCACTTCTTTCTGTCTTACAAATCTCACTGAGGCTGATCCTGATCCTGATCCAGGTTCTGTTTCCCTTGACTTGACCCTCAACTTCAATCCCAATGATGAAGAGTTGAAGGATACAAGTGACACTAACAATGAGGCTCATGCTTCGGCACCAGCCATTCATCGAGTTTTCTCTTGTAATTATTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAGAATGCTCATAAAAGGGAGAGGACAATGGCGAAGCGTGCAATGCGAATGGGGATGTTCACTCAAAGGTATTCAAGCCTAGCATCTCTACCTCTTCATGGTTCTAATTTTAGGTCTCTTGGTGTTGAAGCTCATGCTGCAATGCACCAAAGACACATGCCATCATCATCATCATCATCACTGAGGGCTAATGATATGAGAGCTGCAGCAAAATTTGAGAAAGACTGTTTTGGAACACCAATCTTCATGCAAGATGATGATGTTGGTCTATTTTGGCCTGGCAGTTTCAGGCAGGTAGATAAAATGGGGCATGAACATGCTCATAATTCAAATACTAGTTTTGTAGTAAGGCCACCTCCTGCACAAACATCTACATCTCCTGATCTCACTCTGAGGCTTTAA 744 0.4274 MVTPNLNLESENNIEVSSQVGCNVSSQETSHDLLTKNSTTTSFCLTNLTEADPDPDPGSVSLDLTLNFNPNDEELKDTSDTNNEAHASAPAIHRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTQRYSSLASLPLHGSNFRSLGVEAHAAMHQRHMPSSSSSSLRANDMRAAAKFEKDCFGTPIFMQDDDVGLFWPGSFRQVDKMGHEHAHNSNTSFVVRPPPAQTSTSPDLTLRL. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06390 247 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Seca9g06390 247 FunFam Zinc finger protein 2 72 142 - -
Seca9g06390 247 Gene3D Classic Zinc Finger 75 143 - -
Seca9g06390 247 MobiDBLite consensus disorder prediction 224 247 - -
Seca9g06390 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 41 176 IPR044246 GO:0009788
Seca9g06390 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Seca9g06390 247 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06390 Seca-Chr9 181226452 181227195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06390 94 247 C2H2 Transcription Factor Family AT1G66140 45.055 6.10e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g06390 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06390 - - gmx:100777133 349.362