Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06389 ATGAATGGAGGTAAAGATCTTCTTCCCAATGGTGTTGGCTCTGAAGGGGAGAACTCAAAAAGCAAAGGGTCATCACAGTGGCACCATGATAAAGTTGGGAGTTCTGGGTTGCAAGAATTGACCCTCAGCTACCTCTGTGATAACCCAAAATTGGATCTTGTTGAGAAACATGCACCTGATAGAACCTTGCTGCTGAATTCCTTGGAGAAAGTGAGTTGCAAAGGTAAAGAAATTGTCATTTCTGAGAATTCAAATCATTATGAGAAATGGGTAGAGAGAGATTTTCTGAGTTTGAGTGAGACTAGGGAGAACTCTTCAAAGAGATCCATTGAGGAAGAAGGTGAAAGGGAAGAAGATAGAGCAAAGAAGCAGCAGAAGCTTGAGACTCTTGAGCTCTCTCTTGCTTTGCCTGATGTTTCACTTTCTCTCACTGCTTCAAACGCTTTACAAAATGGAGATGTTAGGCCAAAGCCTAGCAAGCGATCAACAACTACCATCAATTCATGTTCAAATGATTATACAACTGCTTCTCTATCATACTCTTATTCTCATCCTTTCTCACACAACCCAAGTTGCTCACTTACTCATAATTCAACAGAGAATTTTCAGTACTCCGCCAGCAAAGATGATCAAATTTGGTATTGTGGGGAAGGGACTAATGGGTCAGTTCATAGTAGGTTCAAGCCAATAGGTGATGGGGTTGCTTTGGCCAATCATGGTGGTGGATTTAATTCCTTTATGCAAGGGAATAGTCACTATAAAACTACAAGTTCAGATAACCATTCTTTTCTCCCCTCAGATTTGCCTGCCAGGCCAAGATTTGAAGCACAGTCAGAGGGATCAAGGGGAAAGAATTCTGAGAATCTGAGAGGCTTTGATGGTGGGAAAATGTTGAAGCTTTCTAGGCCTGAGAGAATTCTAAGGGAAATTGTTTCTGAGTCTATTCCTGACATGGCACTGACATTTCATGAGTTTACTGATGAAGTCATGGCATCAATTAAGGAATACTTGAAAAACCTAATTGAAATGCAAGAGAAGAAGAAGGAGGAATTAGTAAACCTCCAGAAACAGGTTGAGAGGAGATCTGACCTTACCAAAGAGACTCTTTCAAAGTGCCATAAAGAGCAATTAGAGATTTTAGTTGCTATCAAGATGGGGCTTGCTAGTTTCTTATCTGGTAAATTTCAATTCTCTGAGATGGTTGAGGTTTTCTTGTATAAGAGATGTAGAAACCTGAACTGCAAGAGCTTGTTACCTGTTGATGACTGTGAATGCAAGATTTGCTCTGGGAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAGTAACACTTGTAGTTGGGTTGGCTGTGATGTTTGTTACCACTGGTGTCATGCCACCTGTGGCATTGAGAGGAATCTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCAGGGACCTCTGAGATGCAGTTTCATTGTATAGGCTGTGGACATGCTTCAGAAATGTTTGGATTTGTGAAAGATGTCTTCCTGTGTTGTGCTAAGGATTGGGGCCTAGAAACATTGATGAAAGAGCTTGATTGTGTAAGGAAGATTTTCAAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATCAAAGCAGATGATATGCTGTTAAAGCTTCAAGCTAAACTGATATCTCCTTTGGATGCCTGCAATCACCTCACACAGTTTTTCAGCTATGCAGATGGCATGTCAGAATTTCCTGCTTCTGGAACATCTTCAAAGGATTTATCAGCATCTCAGACTAACTTTACAATGGACACAGCATCAATTTCACAATCTACTTCTCTAATACCAAAATATACTAATGAAATGAACTATTCTAGGTCACATGATCTTCATCAAAATGACCTCAAAATCTCCCTCTTAAGTGAACTAAAAAATGAGACTGATTTCCACATGGGGTCTTTATTAAGGAAAGGTGGGCTTGAAAGCTTGGAAAGCATTGTGAGGATAAAAGAGGAAGAAGCCAAAATGTTCCAAACAAAGGCAGATGAAGCAAGGAGAGAGGCAGAAGGGTTTCAAAGGATGATCAAGACAAAGGCTGCACAAATGGAAGAAGAGTATACTGAAAAGCTTGGTAAACTATGTTTGCATGAGACAGAGGAAAGGAGGAGGAACAAATTAGAGGAACTCAACAGCTTAAAGAATCTCCAATTTGATTACTTCAAAATGAAAATGAGAATGGAAGATGAGATTGATGGTTTGTTGAAGAGAATGGAGGCAACAAAACAGCCATTGGTTTAG 2298 0.4021 MNGGKDLLPNGVGSEGENSKSKGSSQWHHDKVGSSGLQELTLSYLCDNPKLDLVEKHAPDRTLLLNSLEKVSCKGKEIVISENSNHYEKWVERDFLSLSETRENSSKRSIEEEGEREEDRAKKQQKLETLELSLALPDVSLSLTASNALQNGDVRPKPSKRSTTTINSCSNDYTTASLSYSYSHPFSHNPSCSLTHNSTENFQYSASKDDQIWYCGEGTNGSVHSRFKPIGDGVALANHGGGFNSFMQGNSHYKTTSSDNHSFLPSDLPARPRFEAQSEGSRGKNSENLRGFDGGKMLKLSRPERILREIVSESIPDMALTFHEFTDEVMASIKEYLKNLIEMQEKKKEELVNLQKQVERRSDLTKETLSKCHKEQLEILVAIKMGLASFLSGKFQFSEMVEVFLYKRCRNLNCKSLLPVDDCECKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCYHWCHATCGIERNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLCCAKDWGLETLMKELDCVRKIFKGSEDRKGKELHIKADDMLLKLQAKLISPLDACNHLTQFFSYADGMSEFPASGTSSKDLSASQTNFTMDTASISQSTSLIPKYTNEMNYSRSHDLHQNDLKISLLSELKNETDFHMGSLLRKGGLESLESIVRIKEEEAKMFQTKADEARREAEGFQRMIKTKAAQMEEEYTEKLGKLCLHETEERRRNKLEELNSLKNLQFDYFKMKMRMEDEIDGLLKRMEATKQPLV. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06389 765 Pfam PHD - plant homeodomain finger protein 409 533 IPR032881 -
Seca9g06389 765 Coils Coil 107 127 - -
Seca9g06389 765 Coils Coil 333 361 - -
Seca9g06389 765 Coils Coil 715 735 - -
Seca9g06389 765 CDD PHD_OBE1_like 439 498 IPR047578 -
Seca9g06389 765 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 81 763 IPR004082 -
Seca9g06389 765 Pfam Coiled-coil region of Oberon 627 754 IPR032535 -
Seca9g06389 765 MobiDBLite consensus disorder prediction 1 32 - -
Seca9g06389 765 MobiDBLite consensus disorder prediction 254 294 - -
Seca9g06389 765 Coils Coil 667 687 - -
Seca9g06389 765 MobiDBLite consensus disorder prediction 101 123 - -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 361 376 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 421 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 519 538 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 700 722 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 321 343 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 446 466 IPR004082 -
Seca9g06389 765 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 661 681 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06389 Seca-Chr9 181189950 181193565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06389 409 613 PHD Gene Family AT5G57380 23.902 2.48e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06389 - - gmx:100820216 1122.07