Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06365 ATGTCTTCTTCCTCAAGTGCTTCATCATCAAACACCACAGATCCTGAATGGATGTACGACGTTTACTTAAGCTTCACAAAGGAAGACGTTTTAGTGAAAAGTTTAATTTTGTCTCTGAAGGAACAATTAGATAGGAGAAGGATCCGAACTTACTTGGACGACTTTCGAACTCCGCTGTTCTCATTGCTCCAAGCAATTGAACAGTCTCGGGTTTCCATCGTTGTTTTCTCGGAACACTACGGTGGTTCTAGTTCGTGTCTGCAGCAGCTGGAAAAGATGATGGAGTGTCACAGAGCCAAGGGTCAGGTGGTTTTTCCGGTGTTCTTTGATGTAGACATATGGGAGGTTCGCAAGCAAAGGGGCGAGTTTGGAGAAGTGTTTGAAGAAATGATAAAGAGTACGATGGTGGAGGAAGAAACTCTGATTAGTTGGAGGAGAGCCCTCGCAGAAGCTGCTTTCTTTCCTCGATACTCTGGGTTTGGGTGTCTGTTGCGTGAGGCTGCTGTGGATTGTGGTTCTTTTAGTATGATTGGGAATATTTTTGGCACTATTCGCGTACTGCTAGATAATAAATATTTGTCCGGCCCATACTATCCAGTTGGGATAGATGTTTGTGCGAAAGATGTGTATCAAAATTTGAGTTATAATTTAGAAAGAGTTCACTTGATTGGAATATGGGGAGGAGGAGGAATCGGTAAAACATCCATTGCCAAAGTCATTTACAACAGCATGTGTCACAAATTTGAGGGTTCGACTTTCTTTGCAAATATTAAAGATGTATGGAATCTGCAGGAAAAAGGCAAAGATTATCTACAAAAGCAACTTCTTTCTGACATCAATAAACGAGCACTTGTAGTACTTGATGATGTGAGTGAATCAGACCAATTGAAATCATTATGTGGAAGTCGTGAATGTCGTGAATGGTTTGGTCCTGGGAGTATAATATTGATTACAACTACAGAAAAGCATTTACTTGATCCCCTTGACTTGGACATTAAATATGAAATGAAGAAAATGGACGCAAGTAGATCACTTGAGCTTTTTAGTTGGCATGCATTCAGGCATTCTAGTCCTACAAAAAAATTGTTAGAACTCTCTAAAATAGCAGTTTCTTACTGTGGAGGAATGCCATTGGCTCTGGAAGTGCTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGGAAATTATAATGAAGCCACTTGAAAACAATCAAAGTAGTAATGCGGTGCAAAATATTCTGAAATTGAGTTATGATTTTCTCAATGATAATGAGAGAAAGATATTCCTTGAAATAGCTTGCTTCTATATCGGAAATGATAGGCACAACATTACACAGTTATTAAATGGCTATAAACTTGATGCAGAAATTGGGATAAGTAAACTCATTGAACGGAGCCTACTTAAGGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGTTGGAAAAGATGGGAAGAGAAATGAACCATTTGAAGCCAAAATCCAAATGGATCCACGATGTGTTCTTGAGTTTCAGAGGTGAAGACACTAGGAGGTCTTTTACTTCTCATCTACATTCCACGTTAAAAAATGCTGGTATTCAAGTTTACATCGATGACAAACTTGAAAGGGGAGGGAATATCTCATCCTCATTATTGCAAGCAATTGAAGGTTCTAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTAGATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCATAAAACTACTGGTCAAGAAGTTATACCTGTATTCTATGGTGTGGAACCATCAGAAGTGCGTCACCAAAACGGATCTTTTGGCAAAGCATTTAAAGGGCTTGTAAACAAAATCTCTGCGACGAAAGATATGGTTATTACTTGGAAAAGAGCACTCACACAAGCTGCAAACTTGTCTGGATGGAATTTAAATAATTACGGAACTGAAGTCGAGTTGATTGGTGATATTCTTAAAACTGTTACCACAAAACTAGACGATGGAAAATGCTTATTTGTTGCTGACCACCCTGTGGGAATGGAATCTCGTGTGCAGGACATGATTCAATTGTTAAGTGGTGAATCAAGTAATGGGGTTTGTATAATAGGAATTTTGGGAATGGGCGGTTGTGGTAAAACAACCACTGCAAAAGCCATTTACAATGAAATAAATCAAAACTTTGAAGGTAAATGTTTCCTTGCAAATATAAGGGAGGTTTGGGATCAAGATAATGGGAAAGTTTATTTGCAAGAACAACTTCTTTTAGGCATCTTGAAAACTAGAAGGATGAAAATACACAACATTGATTTGGGAAGAAATGTAATAAAGGAAAGTCTTTGCCAAAAAAGGGTACTTGTTGTACTTGATGATATAAACAATTTAGAGCAACTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTGAAGGAAGCAGGATAATCATCACAACTAGAGATGAGCATTTACTGAATGTCCTTCATGTGAACAATATATACAGAATGAAGGAAATGGATGAAAGCGAATCTCTGGAGCTGTTTAGCTGGCATGCATTTAAGCAAGTTGCTCCTATAGCAGATTTCACTGAACTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGCTCTTATTTGTTTGAAAGGGGAATTGCTGAGTGGGAAAGTGCTTTGTCAAAACTTGAAATGATTCCTAATGATCAAATACAGAAGAAATTGAAAATAAGCTATGATGGTTTAAGTGATGATATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTCACACAGATTTTAGATGGTTGTGGACTTAGTGCAGAAATTGGGATGATTGTCCTCATAGAGCGAAGCCTTTTAAAAGTTGACCAGAATAACAAGCTTGAAATGCATGATTTGTTGAAAGCCATGGGAAGAGAAATAATTCGTGATATGTCACCAGAGAACCCTGAGGAACGTAGTAGATTATGGTTTCATCAAGATGTGGTCGACGTGATAACAAACAAGATTGCAACAATAGCTGTCAAAGGGCTGGCTTTTAGTTTACCAAAAAACAATGATGTTGTTTTTGAGACTAAATCATTTAAGAAGATGAAGAGACTTAGATTGCTTCAACTTGGCCATGTAAAACTTACTGGAGATTTTGAGTATTTATCAAAAGACCTGCGCTGGCTCTGCTGGCATGGATTTCCTTTAAGATACATGCCTGGGAACTTTCATCTGAACAGATTAGTTGCTATGGACTTAAAGCACAGCAACCTACAATTAGTCTGGAAGGAGCCACAGTTTCTTGATAGGTTGAAAATCCTCAATCTGAGTCATTCCCATTACTTGACTCAAACCCCTGACTTTACAAGACTGCCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCACAATTGTCAGAGGTTCACTCAACAATTGGAGATCTCAAATTTCTTATTCTGGTAAATTTGAAGGACTGTAAATCCCTTTGTCACCTCCCAAGAAGTATCTATAAGCTAAAATCCCTGAAATCTCTTGTTATTTCCGGCTGTTTAAAAATTGACAAGTTGGAAGAGGACATCATGCAAATGGAATCTTTGACAAATCTAATGGCAGATAACACTGCTATCACTCAAGTACCTCATTCTCTAGTGATATTAAAAAGTATCAGATATGTGTCTCTGTGTGGCTATGAAGGATTTTCACGTCAAGTATTTCCTTCACTAATTTTGTCTTTAATGTCACCATCAAGTAATCCTATGTATAAAGTTTTTGGGCACATTAAATCTTCACTCCAAAGTCTTTCACTTGGTTTATCTGTAAAAAAGCATGCAAAATCAAAATCAAGACCAAGCACATCTCTGATAACATACCCAGAGACTTCCACATTAATTGGTCTTCAGAACTCCATTCACATTGCAGGGTCTGGAAATTCCTCCAGATCTCTTGTTATTCACGCTGGAGAGTGCAACAAAGTCACTGATACTTTTACAAACAGTATTTTACAGGTTTCATTCTCTCTTGCTCTCTCAATAATCAGGATAATACTGTCACTACACATTATTTCCCTATATTGA 4104 0.3777 MSSSSSASSSNTTDPEWMYDVYLSFTKEDVLVKSLILSLKEQLDRRRIRTYLDDFRTPLFSLLQAIEQSRVSIVVFSEHYGGSSSCLQQLEKMMECHRAKGQVVFPVFFDVDIWEVRKQRGEFGEVFEEMIKSTMVEEETLISWRRALAEAAFFPRYSGFGCLLREAAVDCGSFSMIGNIFGTIRVLLDNKYLSGPYYPVGIDVCAKDVYQNLSYNLERVHLIGIWGGGGIGKTSIAKVIYNSMCHKFEGSTFFANIKDVWNLQEKGKDYLQKQLLSDINKRALVVLDDVSESDQLKSLCGSRECREWFGPGSIILITTTEKHLLDPLDLDIKYEMKKMDASRSLELFSWHAFRHSSPTKKLLELSKIAVSYCGGMPLALEVLGSLLLDRTTSEWEIIMKPLENNQSSNAVQNILKLSYDFLNDNERKIFLEIACFYIGNDRHNITQLLNGYKLDAEIGISKLIERSLLKVDKNNKLEMHDLLEKMGREMNHLKPKSKWIHDVFLSFRGEDTRRSFTSHLHSTLKNAGIQVYIDDKLERGGNISSSLLQAIEGSRISIIIFSINYANSRWCLQELEKIMECHKTTGQEVIPVFYGVEPSEVRHQNGSFGKAFKGLVNKISATKDMVITWKRALTQAANLSGWNLNNYGTEVELIGDILKTVTTKLDDGKCLFVADHPVGMESRVQDMIQLLSGESSNGVCIIGILGMGGCGKTTTAKAIYNEINQNFEGKCFLANIREVWDQDNGKVYLQEQLLLGILKTRRMKIHNIDLGRNVIKESLCQKRVLVVLDDINNLEQLNALCGSREWFGEGSRIIITTRDEHLLNVLHVNNIYRMKEMDESESLELFSWHAFKQVAPIADFTELSRRVVAYSGRLPLALEVLGSYLFERGIAEWESALSKLEMIPNDQIQKKLKISYDGLSDDMEKDIFLDICCFFIGKERNYVTQILDGCGLSAEIGMIVLIERSLLKVDQNNKLEMHDLLKAMGREIIRDMSPENPEERSRLWFHQDVVDVITNKIATIAVKGLAFSLPKNNDVVFETKSFKKMKRLRLLQLGHVKLTGDFEYLSKDLRWLCWHGFPLRYMPGNFHLNRLVAMDLKHSNLQLVWKEPQFLDRLKILNLSHSHYLTQTPDFTRLPNLEKLILKDCPQLSEVHSTIGDLKFLILVNLKDCKSLCHLPRSIYKLKSLKSLVISGCLKIDKLEEDIMQMESLTNLMADNTAITQVPHSLVILKSIRYVSLCGYEGFSRQVFPSLILSLMSPSSNPMYKVFGHIKSSLQSLSLGLSVKKHAKSKSRPSTSLITYPETSTLIGLQNSIHIAGSGNSSRSLVIHAGECNKVTDTFTNSILQVSFSLALSIIRIILSLHIISLY. 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06365 1367 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 501 1240 IPR044974 GO:0006952
Seca9g06365 1367 Pfam NB-ARC domain 209 420 IPR002182 GO:0043531
Seca9g06365 1367 Pfam NB-ARC domain 681 917 IPR002182 GO:0043531
Seca9g06365 1367 SMART AAA_5 219 340 IPR003593 GO:0016887
Seca9g06365 1367 SMART AAA_5 698 835 IPR003593 GO:0016887
Seca9g06365 1367 SUPERFAMILY "Winged helix" DNA-binding domain 906 1013 IPR036390 -
Seca9g06365 1367 Gene3D - 13 182 IPR035897 -
Seca9g06365 1367 SUPERFAMILY L domain-like 1027 1279 - -
Seca9g06365 1367 Gene3D - 497 663 IPR035897 -
Seca9g06365 1367 Gene3D - 339 423 IPR042197 -
Seca9g06365 1367 Gene3D - 836 920 IPR042197 -
Seca9g06365 1367 ProSiteProfiles TIR domain profile. 499 665 IPR000157 GO:0007165
Seca9g06365 1367 Pfam TIR domain 19 150 IPR000157 GO:0007165
Seca9g06365 1367 Pfam TIR domain 501 665 IPR000157 GO:0007165
Seca9g06365 1367 SUPERFAMILY Toll/Interleukin receptor TIR domain 497 642 IPR035897 -
Seca9g06365 1367 PRINTS Disease resistance protein signature 1109 1125 - -
Seca9g06365 1367 PRINTS Disease resistance protein signature 701 716 - -
Seca9g06365 1367 PRINTS Disease resistance protein signature 778 792 - -
Seca9g06365 1367 PRINTS Disease resistance protein signature 871 885 - -
Seca9g06365 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 431 IPR027417 -
Seca9g06365 1367 Gene3D - 664 831 IPR027417 -
Seca9g06365 1367 SMART till_3 500 639 IPR000157 GO:0007165
Seca9g06365 1367 SMART till_3 18 154 IPR000157 GO:0007165
Seca9g06365 1367 FunFam Disease resistance protein (TIR-NBS-LRR class) 497 667 - -
Seca9g06365 1367 Gene3D Ribonuclease Inhibitor 1025 1283 IPR032675 -
Seca9g06365 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 669 931 IPR027417 -
Seca9g06365 1367 SUPERFAMILY "Winged helix" DNA-binding domain 410 491 IPR036390 -
Seca9g06365 1367 ProSiteProfiles TIR domain profile. 17 188 IPR000157 GO:0007165
Seca9g06365 1367 Gene3D - 185 330 IPR027417 -
Seca9g06365 1367 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 151 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06365 Seca-Chr9 180812476 180820285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06365 19 490 WRKY Transcription Factor Family AT4G12020 25.605 1.49e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06365 - - pcin:129288830 1259.2