Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06364 ATGTATTCTTCCTCAAGTGCTTCATCGTCAGATCCTAAATCTAAATGGATGCACGACGTTTTCTTAAGCTTCACAGACGAAGACGATGAAGTGTTGCATTTCGTTTATACTCTCTACGCACTATTAGATATGTCCGGATTCCGAACCTGCTTCGACCACATGGACATGGTTCGACCTCCGCTGTCCTCATTGCTCCAAGCAATTGAACAGTCTCAGGTTTCTATCGTTGTTTTCTCGGAACACTACGGTGGTTCTAGTTCGTGTCTGCAGCAGCTGGAAAAGATGATGGAGTGTCACAGAGCCAAGGGTCAGGTGGTTTTACCAGTGTTCTTTGGTGTAGATATATGGGAGGTTCGCAACCAAAGCGGCAAGTTTGGACAAGTGTTTGAACAAACAATAAAGACTAGTAGTGGTAGTAGATACTTCCGCGAGGAAGAAACTCTGAATAGTTGGAGGAAAGCCCTCGCAGAAGCTGCTTTCCTTCCTGGATACTTTGTGCCCTATAACTCATTTAGTGAGGCTGCTGTGGATTGTGTTTCTGTTGGGATTCTTGGGAATATTGTTGACACTATTCGTGTAATGCTAGATGGTAAATATTTGTCCCGCCCGTACTATCCAGTTGGGATAGATGTTTGTGCGAAAGATGTGTATCACAACAACTTGAGTTATAATTTAGAAAGAGTTCACTTGATAGGAATATGGGGAGAGGGAGGAATAGGTAAAACATCTATTGCCAAAGTCATTTACAACAGCATGTGTCACAATTTTGAGGGTTCGATTTTCCTTGCAAATCTTAAAGATGTATGGAATCTGCAGGAAAAAGGCAAAGATTATCTGCAAAAGCAGCTTCTTTCTGACATTAATAAACGAACACTTGTAGTACTTGATGATGTGAGTGAATCAGACCAATTGAAATCCTTATGTGGAAGTCGTGAATGGTTTGGTCCTGGGAGCATAATATTGATTACAACTACAGAGAAGCATTTACTTGATCCCCTTGACTTGGACATTAAATATGAAATGCATGAAATGGATGCAAGTAGATCATTTGAGCTTTTTAGTTGGCATGCATTCAAGAATTCTAGTCCTACAAAAAATCTGTTAAAACTCTCTAGAAAAGCAATTTCTTACTGTGGAGGAATGCCATTGGCTCTGGAAGTGCTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGGAAATTATAATGAAGCCACTTGAAAACAATCAAAGTAGTAATGCGGTGCAAAATATTCTGAAATTGAGTTATGATTTTCTCAATGATAATGAGAGAAAGATATTCCTTGAAATAGCTTGCTTCTATATTGGAAATGATAGACACAATATTACACAATTATTAAATGGCTATAAACTCGATGCAGAAATTGGGATAAGTAAACTCATTGAACGGAGCCTACTTAAGGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGTTGGAAAAGATGGGAAGAGAAATGAACCATTTGAAGCCAAAATCCAAATGGATCCACAATGTGTTCTTGAGTTTCAGAGGTGAAGACACTAGGAGGTCTTTTACTTCTCATCTACATTCCACGTTAAAAAATGCTGGTATTCAAGTTTACATCGATGACAAACTTGAAAGGGGAGGGAATATCTCATCCTCATTATTGCAAGCAATTGAAGGTTCTAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTAGATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCATAAAACTACTGGTCAAGAAGTTATACCTGTATTCTATGGTGTGGAACCATCAGAAGTGCGTCACCAAAACGGATCTTTTGGCAAAGCATTTAAAGGGCTTGTAAACAAAATCTCTGCGACGAAAGATATGGTTATTACTTGGAAAAGAGCACTCACACAAGCTGCAAACTTGTCTGGATGGAATTTAAATAATTACAGAACTGAAGTCAAGTTGATTGATGATATTCTTAAAACTCTTGCCACAAAACTAGAAGATGGTAAATGCTTATTTGTTGCGGATCACCCTGTGGGAATGGAATCTCGTGTGCAAGACATGATTCAATTGTTAAGTGGTGAATCAAGTAATGGGGTTTGTATAATAGGAATTTTGGGAATGGGCGGTTGTGGTAAAACAACCACTGCCAAAGCCATTTACAATGAAATAAATCAAAACTTTGAAGGTAAATGTTTCCTTGCAAATATAAGGGAGGTTTGGGATCAAGATAATGGAAAAGTTTATTTGCAAGAACAACTTCTTTTAGGCATCTTGAAAACTAGAAGGATGAAAATACACAACATTGATTTGGGAAGAAATGTAATAAAGGAAAGTCTTTGCCAAAAAAGGGCACTTGTTGTACTTGATGATATAAACAATTTAGAGCAACTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTGAAGGAAGTAGGTTAATCATCACAACTAGAGATGAGCATTTACTGAATGTCCTTCATGTGGACAATATATACAGAATGAAGGAAATGGATGAAAGTGAATCTTTGGAGCTGTTTAGTTGGCATGCATTTAAGCAAGCGGCTCCAATAGCAGATTTCACTAAACTCTCTAGAAGGGTTGTTTCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGCTCTTATTTGTTTGAAAGGGAAATTGCTGAGTGGGAAAGTGCTTTGTCAAAACTTGAAATGATTCCTAATGATCAAATACAGAGGAAATTAAAATTAAGCTATGACGGTTTAAGTGATCACATGGTGAAAGACATATTCCTTGACATATGTTGTTTCTTTATAGGTAAGGAGAGATACTATGTCATGCAGATTTTAGATGGTTGTGGACTTCATGCAGAAATTGGGATAACTATGCTTATAGAGCGAGGCCTTTTAAAAGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGCTGAAAGCCATGGGAAGAGAAATAATTCGCGATATGTCACCAGAGAAGCCTGAGGAGCGTAGTAGATTATGGTTTCATGATGATGTGGTCGATGTGATGACAAACAAGATTGCAACAATAGCTGTCAAAGGACTGGCTTTTAGTTTACAAGAAAACAATGATGTTGTTTTTGAGACTAAATCATTTAAGAAGATGAAGAGACTTAGATTGCTTCAACTTGGCCATGTAAAACTTACAGGAGATTTTGAGTATTTATCAAAAGACCTGCGTTGGCTCTGCTGGCATGGATTTCCTTTAAGATACATGCCTGGGAACTTTCATCTGAACAAATTAGTTGCTATGGACTTAAAGCATAGCAATCTACAATTAGTCTGGAAGGAGCCACAGTTGCTTGATAGGTTGAAAATCCTCAATCTGAGTCATTCCCATTACTTGACTCAAACCCCTGACTTTTCAAGACTGCCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCACAATTGTCAGAGGTTCACTCAACAATTGGAGATCTCAAATTTCTTATTCTCTTAAATTTGAAGGACTGTAAATCCCTCTGTCACCTCCCAAGAAGTTTCTATAAGCTGAAATCCCTGAAATCTCTTAATGTTTCCGGTTGTTTAAAACTTGACAAGTTGGAAGAGGACATCATGCAAATGGAATCTTTGACAATTCTAATGGCACATAACACTGCGATCACTCAAGTGCCTAATTCTCTATTGAGATCAAAAAATATCAAATATGTTTCTCTGTGTGGCTATGAAGGATTATCTCGTGATGTATTTCCTTCACTGATTTTGTCTTTAATGTCACCATCAAGTAATCCTGCGTATAAAGTTTTTGGGCACATTACATCTTCACTCCAAAGTCTTTCACTTGGTTTATCTGCCAAAAATCATGCGGAATTGGAATCAACACCAAGCACATCTCAGATTACATACCCAGAGACTCCCACAAAACCAAGCACGTCTCATATGACATATGCAGAGACTTCCACATTAATTGATCTTTAG 3987 0.3785 MYSSSSASSSDPKSKWMHDVFLSFTDEDDEVLHFVYTLYALLDMSGFRTCFDHMDMVRPPLSSLLQAIEQSQVSIVVFSEHYGGSSSCLQQLEKMMECHRAKGQVVLPVFFGVDIWEVRNQSGKFGQVFEQTIKTSSGSRYFREEETLNSWRKALAEAAFLPGYFVPYNSFSEAAVDCVSVGILGNIVDTIRVMLDGKYLSRPYYPVGIDVCAKDVYHNNLSYNLERVHLIGIWGEGGIGKTSIAKVIYNSMCHNFEGSIFLANLKDVWNLQEKGKDYLQKQLLSDINKRTLVVLDDVSESDQLKSLCGSREWFGPGSIILITTTEKHLLDPLDLDIKYEMHEMDASRSFELFSWHAFKNSSPTKNLLKLSRKAISYCGGMPLALEVLGSLLLDRTTSEWEIIMKPLENNQSSNAVQNILKLSYDFLNDNERKIFLEIACFYIGNDRHNITQLLNGYKLDAEIGISKLIERSLLKVDKNNKLEMHDLLEKMGREMNHLKPKSKWIHNVFLSFRGEDTRRSFTSHLHSTLKNAGIQVYIDDKLERGGNISSSLLQAIEGSRISIIIFSINYANSRWCLQELEKIMECHKTTGQEVIPVFYGVEPSEVRHQNGSFGKAFKGLVNKISATKDMVITWKRALTQAANLSGWNLNNYRTEVKLIDDILKTLATKLEDGKCLFVADHPVGMESRVQDMIQLLSGESSNGVCIIGILGMGGCGKTTTAKAIYNEINQNFEGKCFLANIREVWDQDNGKVYLQEQLLLGILKTRRMKIHNIDLGRNVIKESLCQKRALVVLDDINNLEQLNALCGSREWFGEGSRLIITTRDEHLLNVLHVDNIYRMKEMDESESLELFSWHAFKQAAPIADFTKLSRRVVSYSGRLPLALEVLGSYLFEREIAEWESALSKLEMIPNDQIQRKLKLSYDGLSDHMVKDIFLDICCFFIGKERYYVMQILDGCGLHAEIGITMLIERGLLKVDKNNKLEMHDLLKAMGREIIRDMSPEKPEERSRLWFHDDVVDVMTNKIATIAVKGLAFSLQENNDVVFETKSFKKMKRLRLLQLGHVKLTGDFEYLSKDLRWLCWHGFPLRYMPGNFHLNKLVAMDLKHSNLQLVWKEPQLLDRLKILNLSHSHYLTQTPDFSRLPNLEKLILKDCPQLSEVHSTIGDLKFLILLNLKDCKSLCHLPRSFYKLKSLKSLNVSGCLKLDKLEEDIMQMESLTILMAHNTAITQVPNSLLRSKNIKYVSLCGYEGLSRDVFPSLILSLMSPSSNPAYKVFGHITSSLQSLSLGLSAKNHAELESTPSTSQITYPETPTKPSTSHMTYAETSTLIDL. 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06364 1328 ProSiteProfiles TIR domain profile. 16 195 IPR000157 GO:0007165
Seca9g06364 1328 FunFam Disease resistance protein (TIR-NBS-LRR class) 502 672 - -
Seca9g06364 1328 SMART AAA_5 703 843 IPR003593 GO:0016887
Seca9g06364 1328 SMART AAA_5 227 350 IPR003593 GO:0016887
Seca9g06364 1328 MobiDBLite consensus disorder prediction 1295 1318 - -
Seca9g06364 1328 Gene3D - 470 641 IPR035897 -
Seca9g06364 1328 SMART till_3 505 644 IPR000157 GO:0007165
Seca9g06364 1328 SMART till_3 17 161 IPR000157 GO:0007165
Seca9g06364 1328 Gene3D - 193 335 IPR027417 -
Seca9g06364 1328 Pfam TIR domain 506 671 IPR000157 GO:0007165
Seca9g06364 1328 Pfam TIR domain 18 157 IPR000157 GO:0007165
Seca9g06364 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 436 IPR027417 -
Seca9g06364 1328 PRINTS Disease resistance protein signature 876 890 - -
Seca9g06364 1328 PRINTS Disease resistance protein signature 1185 1201 - -
Seca9g06364 1328 PRINTS Disease resistance protein signature 706 721 - -
Seca9g06364 1328 PRINTS Disease resistance protein signature 783 797 - -
Seca9g06364 1328 Gene3D - 643 836 IPR027417 -
Seca9g06364 1328 SUPERFAMILY L domain-like 1032 1284 - -
Seca9g06364 1328 SUPERFAMILY "Winged helix" DNA-binding domain 912 1018 IPR036390 -
Seca9g06364 1328 ProSiteProfiles TIR domain profile. 504 670 IPR000157 GO:0007165
Seca9g06364 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 936 IPR027417 -
Seca9g06364 1328 SUPERFAMILY Toll/Interleukin receptor TIR domain 502 647 IPR035897 -
Seca9g06364 1328 Gene3D Ribonuclease Inhibitor 1030 1310 IPR032675 -
Seca9g06364 1328 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Seca9g06364 1328 Gene3D - 841 925 IPR042197 -
Seca9g06364 1328 Gene3D - 344 428 IPR042197 -
Seca9g06364 1328 Gene3D - 10 190 IPR035897 -
Seca9g06364 1328 Pfam NB-ARC domain 686 916 IPR002182 GO:0043531
Seca9g06364 1328 Pfam NB-ARC domain 229 425 IPR002182 GO:0043531
Seca9g06364 1328 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 506 1224 IPR044974 GO:0006952
Seca9g06364 1328 SUPERFAMILY "Winged helix" DNA-binding domain 415 496 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06364 Seca-Chr9 180776650 180784247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06364 65 495 WRKY Transcription Factor Family AT4G12020 25.934 4.34e-35 144