Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06353 ATGTCTTCCCCAAGTGCATCCTCATCCAACACCAAAGTTTTCTTGAGCTTCACAATGGGAGACGTTGAAGTGGAGCCTTTCATTTTGATTCTCAGTAAAGACTTAAGATGTTCCGGAGTCCAAACTTTCTTCAACAACCTAGACGATGTTGGAAGAGAAAAACAAAAATTGTTGCGCTCGGACCTGCGAGCAATAGAACGGTCTAAGGTTTCTATCGTTGTTTTTTCTGAGCACTACGCTGGTTTTAACTTGTGTCTGCGGGAGCTAGAAAAGATTATGGAGTGTCACAGAGCCACGGGTCAGATGGTTTTGCCAGTGTTCTTTGGCGTGGACAGATGGGATGTGCGTAAGCAAAGTGGTAGGTTTGGAGAAAAGTTTGAACGAATGATCAAAGTGACGTCGACGGAGGAAGACACTGTGTTGAGATGGAGGAGAGCCCTCACCGAAGTTGCTTTCTTTCCCGGTTGCTTCGCATCACCTCGCAGTTATGGTGCTATAGATGGAATTATGAATACTGTTCATATGGTGCTAGATGGTAAATTTTTTTCTCGCCCACTCCATCCAGTTGGGATAGATGTTCATGTGAAAGGTGTTTGTGACAGATTTAAATATAATTTGAAAAAAGTTCACTTGGTAGGAATATGGGGAAAGGGAGGAATTGGTAAAACATCAGTTGCCAACTTTGTTTATGACAGCATGTGTCACAAATTTGAGGGTTCAAGTTTCCTTGCAAATATTAAGGATGTATGGAAGCAGGATAATGGCAAAGATTATCTACAAAAGCAACTTTCCGATATCAATAATACGACATCAATAATAAATAGCACTGAAACAGAGAAAATGTTTTCTCATAAACGAGCACTTGTAGTACTTGATGATGTGAGTGATTCAGATCAACTGATATCATTATGTCGAAGTTGTGAATGGTTTGGTGATGGGAGTGTAATATTGATTACAACTAGAGAGAAGTATTTACTTGATCTCCTTGAACTTCAATATAAATATGAAATGAAGGAAATGGGCACAAGTATATCACTTGAACTTTTTAGTTGGCATGCATTCAAGAATTCTAGTCCTACAAAAGATCTGTTAAAACTCTCAAGAAGAGCAATTTCTTACTGTGGGGGGCTGCCACTAGCTCTTGAAGTTTTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGAAAAGTGTATTGAAGCTACTTAAAAGAAATCAAAGTAATGAGGTGATAGATATACTAAAAATGAGCTATGATTTTCTAGATGATGATGAGAAAAAAATATTCATTGAAATAGCTTGTTTCTACATCGGAAAGGATAGACATAGAATTACACAACTATTAAATGGTTGTGGACTTGCTGCAGAAACAGGGATAAGTAAACTCATTGAACGGAGCCTTCTTAAGGTTGACCAGAATAACAAGCTTGAAATGCATGACTTGTTGCAAGAGATGGGAAGAGAAATGAATCATTTAAACCCAAAATCCAAGTGGATCTACGATGTGTTCTTGAGTTTCAGAGGTGGTGACACTCGCCAGTCTTTTACTGCTCATCTCCATGCCGCTTTAAAAGATGCTGGTATTGAGGTTTACATGGATGAAAAACTTGAAAAAGGAGAAAATATCACATCCTCATTGTTGCAAGCAATTGAAGGTTCTAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTAGATGGTGCCTTCAAGAGGTAGAGAAAATCATGGAGTGTCATAGAACTACTGGTCAAGAAGTTATGCCTGTATTCTATGGTGTGGAACCATCTGAAGTGCGTAACCAAATCGAATCTTTTGGAGAAGCATTTGAAGGACTTGTACGCAGAATCTCAGCTACAAAAAATATGATTATCAGTTGGAAAAGAGCACTTAGTGAGGCTGCAAACTTGTCTGGATGGACTTTAAATAATTACAGAACTGAAAATGAGTTGATTGATGACATTCGTAGAACTGTTACCAGAAAACTAGACGATGGTTCATACTTAGTTGTTGCTAATCACCCAGTGGGAGTGGAATCTCGTGTGCAGGATATAATTCAATTGTTAAGTGGTAAATCGAATGAGGTTTGCATGGTTGGAATCTTGGGAATGGGAAGATGTGGTAAAACTACCATTGCTAAAGCCGTTTATAATGAAATTAATCAAAACTTTGAAGGTAAAAGTTTCCTTGCAGACATAAGGGAGGTTTGGGACCAAGATGGTGGCAAAGTTCATTTGCAAGAACAACTTCTTTCAGGCATCTTGAAAACTAGAAGAATGAAAATTAATAACATTGAATTGGGAAGAACTATAATAAAGGAAAGCCTTTGCCAAGAAAGGGCACTTGTTGTATTTGATGATATAAATAATGTGGACCAACTAAAGGCTTTGTGTGGAAGTCGTGATTGGTTTGGTCAGGGAAGTAGGTTAATCATCACAACTAGAGATGAGCATTTACTGAAAGTTCTCAAAGTGGAAAATATATACAGAATGAAAGAAATGGATGAAAATGAATCTCTTGAGCTTTTTTGTTGGCATGCATTTAAGCAAGCTGCACCATCAGCAGATTTTGTTGAACTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTGCCACTAGCCCTTGAAGTTCTTGGCTCCTATTTGTTTGAAAGGGAAATTACTGAATGGAAAAGTGCATTGTCGAAACTTGAAGTTATTCCCAATGATCAAATACAGAAGAAATTGAGAATAAGCTATGATGGTTGTGATGATATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTCACACAGATTTTAGATGGTTGTGTACGTGGTGCAGAAATTGGGATAACTGTCCTCATAGAGCGAAGCCTTGTAAAAGTTGGCAAGAATAACAAGCTTGAAATGCATGAATTGCTAAAAGTCATGGGAAGGGAGATAATTCGTGAGACAAAACCAGAGAATCCTGAGGAGCGTAGCAGATTATGGTTTCATGATGATGTGCTTGATGTGATGATAAAGAACATTGCAACAATAGCTGTCAAGGGACTGGCTTTTAGTTTACCAAAAACAAATGATGTTGTTTTTGAGACTAAAGCATTTATGATGATGAAGAGACTCAGATTACTTCAACTTGATAATGTAAAACTTACCGGAGATTTTGAGTATGTATCAGAAGACTTGCGCTGGCTCTGTTGGCATGGATATCCTTTAAGATACATTCCTGGGAACTTTTATCTGGAAAAATTAGTTGCTATGGACTTAAAGCACAGCAAACTACAATTAGTCTGGAAGGAGCCGCAGCTGCTTGATAGGCTGAAAGTCCTCAATCTGAGTCATTCCCATTACTTGACACGAACCCCGGACTTTTCAGGACTACCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCGAAATTGTCAGAGGTTCACTCAACAATTGGAGATCTCAAATATCTTATTCTGGTAAATTTAAAGGACTGTAAATCCCTCAGTCACCTCCCAAGAAGTCTCTATAAGTTGAAGTCTCTGAAATCTCTTGTTCTTTCCGGCTGTTCAAAAATTGACAAGTTGGAAGAAGACATCATGCAAATGGAATCCTTGACAAGTCTAAGAACAGATAACACTGCTATTACACAAGTGCCCTCTTCTCTAGTAAGATTAAAAAATATCAAATATGTCTCTTTGTGCAACCATGAAGGATTATCACGTGATGTATTTCCTTCACTAATTTGGTCTTTTATGTCACCAAGAAATCTTATGTGTAAAGTTTTGGGGAGCTTTTCATCTTTACTTCCTAGTCTTTCACTTGGTTTATCTGCCAATAATCATGTAGAATTGGAATCAAGCACATCTCATATGACATATGCAGAGACTTCCACATTAATTGATCTTCAGAACTCCATTCACATTGCAGGGTCTGGAAATTCCTCCAGATCTCTTGTTATTCAAGCTGGAGAGTGCAACAAAGCCACTGATACTTTTACAAAGAATATTTTACAGGAATGGACTAGTGATGGATCTAGTGACTCTGAGTGCTCTTTTCCTGGTGACACACGTTCTAAATGGCTAACCTTCAATGGCGATTCCTCATTAGTGTTTAAAGTGCCTAATAATGGTAGCAAGTTGAAAGGAATGACTCTGCGCATTATTTATTCATCTTCCCTTGTCAACCTGGCTCCTGAGTGTGTTCTTCTTAATGTGTTCAATTACACAAAGAACACCACTCTGTCCTACAAGCTAGACACAACAACTTCTCTTAAAGATGAAGAGTGGCAAGGATTGATGTCAAATCTTGAACCTGGTGATGAAGTGGAGATTGTTATAGTTTTGGGACATCGATTTACTGTGAAGAAGATAGTGGCCCATCTAATATATAAAGAAATAACCAATCACAAAATTATGGAGTGTTCATCAGCGCTAGACAAGGGTCAAATTTGA 4458 0.3798 MSSPSASSSNTKVFLSFTMGDVEVEPFILILSKDLRCSGVQTFFNNLDDVGREKQKLLRSDLRAIERSKVSIVVFSEHYAGFNLCLRELEKIMECHRATGQMVLPVFFGVDRWDVRKQSGRFGEKFERMIKVTSTEEDTVLRWRRALTEVAFFPGCFASPRSYGAIDGIMNTVHMVLDGKFFSRPLHPVGIDVHVKGVCDRFKYNLKKVHLVGIWGKGGIGKTSVANFVYDSMCHKFEGSSFLANIKDVWKQDNGKDYLQKQLSDINNTTSIINSTETEKMFSHKRALVVLDDVSDSDQLISLCRSCEWFGDGSVILITTREKYLLDLLELQYKYEMKEMGTSISLELFSWHAFKNSSPTKDLLKLSRRAISYCGGLPLALEVLGSLLLDRTTSEWKSVLKLLKRNQSNEVIDILKMSYDFLDDDEKKIFIEIACFYIGKDRHRITQLLNGCGLAAETGISKLIERSLLKVDQNNKLEMHDLLQEMGREMNHLNPKSKWIYDVFLSFRGGDTRQSFTAHLHAALKDAGIEVYMDEKLEKGENITSSLLQAIEGSRISIIIFSINYANSRWCLQEVEKIMECHRTTGQEVMPVFYGVEPSEVRNQIESFGEAFEGLVRRISATKNMIISWKRALSEAANLSGWTLNNYRTENELIDDIRRTVTRKLDDGSYLVVANHPVGVESRVQDIIQLLSGKSNEVCMVGILGMGRCGKTTIAKAVYNEINQNFEGKSFLADIREVWDQDGGKVHLQEQLLSGILKTRRMKINNIELGRTIIKESLCQERALVVFDDINNVDQLKALCGSRDWFGQGSRLIITTRDEHLLKVLKVENIYRMKEMDENESLELFCWHAFKQAAPSADFVELSRRVVAYSGRLPLALEVLGSYLFEREITEWKSALSKLEVIPNDQIQKKLRISYDGCDDMEKDIFLDICCFFIGKERNYVTQILDGCVRGAEIGITVLIERSLVKVGKNNKLEMHELLKVMGREIIRETKPENPEERSRLWFHDDVLDVMIKNIATIAVKGLAFSLPKTNDVVFETKAFMMMKRLRLLQLDNVKLTGDFEYVSEDLRWLCWHGYPLRYIPGNFYLEKLVAMDLKHSKLQLVWKEPQLLDRLKVLNLSHSHYLTRTPDFSGLPNLEKLILKDCPKLSEVHSTIGDLKYLILVNLKDCKSLSHLPRSLYKLKSLKSLVLSGCSKIDKLEEDIMQMESLTSLRTDNTAITQVPSSLVRLKNIKYVSLCNHEGLSRDVFPSLIWSFMSPRNLMCKVLGSFSSLLPSLSLGLSANNHVELESSTSHMTYAETSTLIDLQNSIHIAGSGNSSRSLVIQAGECNKATDTFTKNILQEWTSDGSSDSECSFPGDTRSKWLTFNGDSSLVFKVPNNGSKLKGMTLRIIYSSSLVNLAPECVLLNVFNYTKNTTLSYKLDTTTSLKDEEWQGLMSNLEPGDEVEIVIVLGHRFTVKKIVAHLIYKEITNHKIMECSSALDKGQI. 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06353 1485 SMART till_3 10 153 IPR000157 GO:0007165
Seca9g06353 1485 SMART till_3 500 639 IPR000157 GO:0007165
Seca9g06353 1485 SUPERFAMILY "Winged helix" DNA-binding domain 410 490 IPR036390 -
Seca9g06353 1485 SUPERFAMILY L domain-like 990 1308 - -
Seca9g06353 1485 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 155 IPR035897 -
Seca9g06353 1485 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 501 1241 IPR044974 GO:0006952
Seca9g06353 1485 Gene3D - 341 423 IPR042197 -
Seca9g06353 1485 Gene3D - 835 919 IPR042197 -
Seca9g06353 1485 FunFam Disease resistance protein (TIR-NBS-LRR class) 497 667 - -
Seca9g06353 1485 ProSiteProfiles TIR domain profile. 499 665 IPR000157 GO:0007165
Seca9g06353 1485 Gene3D - 497 662 IPR035897 -
Seca9g06353 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 431 IPR027417 -
Seca9g06353 1485 PRINTS Disease resistance protein signature 281 295 - -
Seca9g06353 1485 PRINTS Disease resistance protein signature 374 388 - -
Seca9g06353 1485 PRINTS Disease resistance protein signature 211 226 - -
Seca9g06353 1485 Pfam TIR domain 501 665 IPR000157 GO:0007165
Seca9g06353 1485 Pfam TIR domain 13 149 IPR000157 GO:0007165
Seca9g06353 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 929 IPR027417 -
Seca9g06353 1485 Gene3D - 5 180 IPR035897 -
Seca9g06353 1485 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
Seca9g06353 1485 Pfam NB-ARC domain 209 419 IPR002182 GO:0043531
Seca9g06353 1485 Pfam NB-ARC domain 681 907 IPR002182 GO:0043531
Seca9g06353 1485 Gene3D Ribonuclease Inhibitor 1026 1314 IPR032675 -
Seca9g06353 1485 Gene3D - 663 830 IPR027417 -
Seca9g06353 1485 Gene3D - 181 333 IPR027417 -
Seca9g06353 1485 SUPERFAMILY Toll/Interleukin receptor TIR domain 497 642 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06353 Seca-Chr9 180596083 180609218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06353 6 490 WRKY Transcription Factor Family AT4G12020 26.113 6.71e-38 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06353 - - pcin:129288830 1346.64