Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06352 ATGACGTTAAACACCACAAATCCTGAATGTATACACCAAGTTTTCTTAAGCTTCACAACGGAAGACGCTGGAGTGCTGCCTTTCTTTTACCGTATGTACCAGTGGCACTTAGAAAAAACCACAAGAGTCACAAACTTCCACTACTGGCCATGGGAAGCGGATCAAGGCGAGTCAATGTCCTCACGGCTGCAAGCAATCGAAGAGTCCAGGATCTGTATCGTTTTTTTCTCAGAAAACTACGTTGGTACTAGCTGCCATTTGTTGGAGTTGGAAAAAATCATGGAGTGTCACAGAGAAAAGGTTCAGGTGGTTTTGCCTGTGTTCTATGGCGTGGACATATGGGAAGTGCGCAAGCAAACGGGTAGGTTTGGACAAGTGTTTGAACGAATGATCGGGGAAACGTCGGTGAAGGAAGACACTGTGTTGAGTTGGAGGAGAGCACTGACCGAAGCTGCTTTCTTTCCCGGTTACTTCGTATCCCCTCAGCAATTGTGTAATCTTCTGGATCTTCATGCTCCTGGTGAAATTGTGGACTTTATATATATGATGCTAGATGCTAAATATTTGTCTGGCCCATGTTATCAAGTTGGCATAGATGTTGATGCAACAAATTTGATTGACTTGGTAGAAAAGGGTTACAATTTGGAAAGAGTTCACTTGGTAGGAATATGGGGAAAGGGAGGAATTGGTAAAACATCCCTTGCCAAAGTCATTTACAACAGAATGTGTCACAGTTTTGAGGGTTCGAGTTTCCTTGCAAATATTAAAGGTGTATGGAAGCAGTTTAACGACTTTGAGTATCTACAGAAACAACTTCTTTCAGACATCAATAATACAACTGACACCATAATAAATAGCACTAAAATGGTGAAAATACTTTCTCATAAACGGGCATTTATAGTATTCGATGATGTGGGTAATGCAGGCCAACTGATGTCATTGTGTGGAAGTCGTGAATGTCGTGAATGGTTTGGTCTTGGGAGTATAATATTGATTACAACCAGAGAAAAGAAATTACTTGATCTCCTTAAATTAGACATTCAATATGAAATGAAGAAAATGGACAAAAGTAGATCATTAGAGCTTTTTAGTTGGCATGCATTTAGGCATTCTAGTCCTGCCAAAGATTTAATCAAATCCTCGAGAAAAGCAATTTCTTACTGTGGAGGTCTGCCTTTAGCTCTCGAAGTTCTGGGCTCTTTGTTACTTGACAGAACAACATCAGAGTGGAAAAGTATATTAAAGCTACTTGAAAGAAATCAGAGTGATGTGGTGCAAAATATACTGAAAATGAGCTATGATTTTCTAGATGATAATGAGAAAAACTTATTCCTTGAAATAGCTTGTCTCTATGTCGGAAAGAACAGACACAACATTACTCAGTTACTAAATTGCTGTGGACTTGCTGCAGAAACTGGGATATGTAAACTCATTGAACGGAACCTGCTTAAGGTTGACCAGAATAACAAGCTTGAAATGCATGACTTGTTACAAGAGATAGGAAGAGAAATGAATCATTTAGAGCCAAAATCCAAATGGATCTACGATGTGTTCTTGAGTTTCAGAGGTGGTGACACTCGCAAGTCTTTTACTTCTTACCTCAATGCCGCTTTAAAAGATGCTCGTACTGAGGTTTACATGGATGAAAAACTTGAAAAAGGAGAAAATATCACATCCTCATTGTTGCAAGCAATTGAAGGTTCTAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTAGATGGTGCCTTCAAGAGGTAGAGAAAATCATGGAGTGTCATAGAACTACTGGTCAAGAAGTTTTACCTGTATTCTATGGTGTGGAACCATCCGAAGTGCGTAAGCAAATCGGATCTTTTGGAGAAGCATTTGAAGGACTTGTACGCAGAATCTCAGCTACAAAAAATATGATTATCAGTTGGAAAAGAGCACTTAGTGAGGCTGCAAACTTGTCTGGATGGACTTTAAATAATTACAGAACTGAAAATGAGTTGATTGATGACATTCGTAAAACTGTTACCACAAAACTAGACGATGGTTCATACTTATTTGTTCCTAATCACCTAGTGGGAGTAGAATCTCGTGTGCAGGATATAATTCAATTGTTAAGTGGTAAATCGAATGAGGTTTGCATGGTGGGAATCTTGGGAATGGGAGGATGTGGTAAAACTACCATTGCTAAAGTCGTTTATAATGAAATTAATCAAAACTTTGAAGGTAAAAGTTTCCTTGCAAATATAAGGGAGGTTTGGGACCAAGATGGTGGCAAAGTTCATTTGCAAGAAGAACTTCTTTCAGGTATCTTGAAAACTAGAAGAATGAAAATTAGTAACATTGAATTGGGAAGAACTATAATAAAGGAAAGCCTTTGCCAAGAAAGGGCACTTGTTGTACTTGATGATATAAATAATGTGGACCAACTAAATGCTTTGTGTGGAAGTCGTGATTGGTTTGGTCAGGGAAGTAGGTTAATCATCACAACAAGAGATGAGCATTTACTGAAAGTTCTCAAAGTGGAAAATATATACAGAATGAAAGAAATGGATGAAAACGAATCTCTTGAGCTTTTTTGTTGGCATGCATTTAAGCAAGCTGCTCCATCAGCAGATTTTGTTGAGCTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGATCTTATTTGTTTGAAAGGGAAATTACTGTGTGGGAAAGTGTATTGTCGAAACTTGAAGTTATTCCCAATGATCAAATACAGAAGAAATTGAAAATAAGCTATGATGGTTTAAGTGATGATATGGAAAAAGATATATTTCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTTACACTGATTTTAGATGGCTGTGGACTTCATGCAGAAATTGGGATAACTGTCCTCATAGAGCGAAGCCTTGTAAAAGTTGGCAAGAATAACAAGCTTGAAATGCATGAATTGCTAAAAGTCATGGGAAGAGAGATAATTCGTGAGACATCACCAGAGAATCCTGAGGAGCGTAGCAGATTATGGTTTCATGATGATGTGGTTGATGTGATGACAAACAACATTGCAACAATAGATATCAAGGGACTGGCTTTTAGTTTACCAAAAACAAATGATGTTGTTTTTGAGACTAAAGCATTTATGATGATGAAGAGACTCAGATTACTTCAACTTGATAATGTAAAACTTACTGGAGATTTTGAGTATGTATCAAAAAACTTGCGCTGGCTCTGTTGGCATGGATTTCCTTTAAGATACATTCCTGGGAACTTTTATCTGAAAAAATTAGTTGCTATGGACTTAAAGCACAGCAAACTACAATTAGTCTGGAAGGAGACGCAGCTGCTTGATAGGCTGAAAGTCCTCAATCTGAGTCATTCCCATTACTTGACACGAACCCCGGACTTTTCAGGACTACCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCGAAATTGTCAGAGGTTCACTCAACAATTGGAGATCTCAAATATCTTATTCTGGTAAATTTAAAGGACTGTAAATCCCTCAGTCACCTCCCAAGAAGTTTCTATAAGTTGAAATCTCTGAAATCTCTTGTTCTTTCCGGCTGTTCAAAAATTGACAAGTTGGAAGAAGACATCATGCAAATGGAATCCTTGACAAGTCTAATAGCAGATAACACTGCTATTACACAAGTGCCCTCTTCTCTAGTAAGATTAAAAAATATCAAATATGTCTCTTTGTGCAACCATGAAGGATTATCACGTGATGTATTTCCTTCACTAATTTGGTCTTTTATGTCACCAAGAAATCTTATGTGTAAAGTTTTTGGGAGCTTTTCATCTTTACTTCCCAGTCTTTCACTTGGTTTATCTGCCAATAATCATGTAGAATTGGAATCAAGACCAAGCACTTCTCTGATAACATACACAGAGACTCCCACAAAACCAAGCACATCTCATATGACATATGCAGAGACTTCCACATTAATTGATCTTCAGAACTCCATTCACATTGCAGGGTCTGGAAATTCCTCCAGATCTCTTGTTATTCAAGCTGGAGAGTGCAACAAAGCCACTGATACTTTTACAAAGAATATTTTACAGGCTTCATTCTCTCTTGGTCTCTCAATAATCAGGATAATACTGTCACTAGAATGGACTAGTGATGGATCTAGTGACTCTGAGTGCTCTTTTCCTGGTGACACACGTTCTAAATGGCTAACCTTCAATGGCGATTCCTCATTAGTGTTTAAAGTGCCTAATAATGGTAGCAAGTTGAAAGGAATGACTCTGCGCATTATTTATTCATCTTCCCTTGTCAACCTGGCTCCTGAGTGTGTTCTTCTTAATGTGTTCAATTACACAAAGAACACCACTCTGTCCTACAAGCTAGACACAACAACTTCTCTCAAAGATGAAGAGTGGCAAGGATTGATTTCAAATCTTGAACCTGGTGATGAAGTGGAGATTGTTATAGTTTTGGGACATCGATTTACTGTGAAGAAGATAGTGGCCCATCTAATATACAGCGCTAGACAAGGGTCAAATTTGAGAGATGCTGTGTTTTAG 4578 0.3801 MTLNTTNPECIHQVFLSFTTEDAGVLPFFYRMYQWHLEKTTRVTNFHYWPWEADQGESMSSRLQAIEESRICIVFFSENYVGTSCHLLELEKIMECHREKVQVVLPVFYGVDIWEVRKQTGRFGQVFERMIGETSVKEDTVLSWRRALTEAAFFPGYFVSPQQLCNLLDLHAPGEIVDFIYMMLDAKYLSGPCYQVGIDVDATNLIDLVEKGYNLERVHLVGIWGKGGIGKTSLAKVIYNRMCHSFEGSSFLANIKGVWKQFNDFEYLQKQLLSDINNTTDTIINSTKMVKILSHKRAFIVFDDVGNAGQLMSLCGSRECREWFGLGSIILITTREKKLLDLLKLDIQYEMKKMDKSRSLELFSWHAFRHSSPAKDLIKSSRKAISYCGGLPLALEVLGSLLLDRTTSEWKSILKLLERNQSDVVQNILKMSYDFLDDNEKNLFLEIACLYVGKNRHNITQLLNCCGLAAETGICKLIERNLLKVDQNNKLEMHDLLQEIGREMNHLEPKSKWIYDVFLSFRGGDTRKSFTSYLNAALKDARTEVYMDEKLEKGENITSSLLQAIEGSRISIIIFSINYANSRWCLQEVEKIMECHRTTGQEVLPVFYGVEPSEVRKQIGSFGEAFEGLVRRISATKNMIISWKRALSEAANLSGWTLNNYRTENELIDDIRKTVTTKLDDGSYLFVPNHLVGVESRVQDIIQLLSGKSNEVCMVGILGMGGCGKTTIAKVVYNEINQNFEGKSFLANIREVWDQDGGKVHLQEELLSGILKTRRMKISNIELGRTIIKESLCQERALVVLDDINNVDQLNALCGSRDWFGQGSRLIITTRDEHLLKVLKVENIYRMKEMDENESLELFCWHAFKQAAPSADFVELSRRVVAYSGRLPLALEVLGSYLFEREITVWESVLSKLEVIPNDQIQKKLKISYDGLSDDMEKDIFLDICCFFIGKERNYVTLILDGCGLHAEIGITVLIERSLVKVGKNNKLEMHELLKVMGREIIRETSPENPEERSRLWFHDDVVDVMTNNIATIDIKGLAFSLPKTNDVVFETKAFMMMKRLRLLQLDNVKLTGDFEYVSKNLRWLCWHGFPLRYIPGNFYLKKLVAMDLKHSKLQLVWKETQLLDRLKVLNLSHSHYLTRTPDFSGLPNLEKLILKDCPKLSEVHSTIGDLKYLILVNLKDCKSLSHLPRSFYKLKSLKSLVLSGCSKIDKLEEDIMQMESLTSLIADNTAITQVPSSLVRLKNIKYVSLCNHEGLSRDVFPSLIWSFMSPRNLMCKVFGSFSSLLPSLSLGLSANNHVELESRPSTSLITYTETPTKPSTSHMTYAETSTLIDLQNSIHIAGSGNSSRSLVIQAGECNKATDTFTKNILQASFSLGLSIIRIILSLEWTSDGSSDSECSFPGDTRSKWLTFNGDSSLVFKVPNNGSKLKGMTLRIIYSSSLVNLAPECVLLNVFNYTKNTTLSYKLDTTTSLKDEEWQGLISNLEPGDEVEIVIVLGHRFTVKKIVAHLIYSARQGSNLRDAVF. 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06352 1525 Gene3D - 681 845 IPR027417 -
Seca9g06352 1525 ProSiteProfiles TIR domain profile. 513 679 IPR000157 GO:0007165
Seca9g06352 1525 SMART AAA_5 217 355 IPR003593 GO:0016887
Seca9g06352 1525 SMART AAA_5 711 848 IPR003593 GO:0016887
Seca9g06352 1525 SUPERFAMILY "Winged helix" DNA-binding domain 425 505 IPR036390 -
Seca9g06352 1525 Pfam NB-ARC domain 219 435 IPR002182 GO:0043531
Seca9g06352 1525 Pfam NB-ARC domain 695 929 IPR002182 GO:0043531
Seca9g06352 1525 Gene3D Ribonuclease Inhibitor 1034 1312 IPR032675 -
Seca9g06352 1525 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 515 1257 IPR044974 GO:0006952
Seca9g06352 1525 ProSiteProfiles TIR domain profile. 10 184 IPR000157 GO:0007165
Seca9g06352 1525 FunFam Disease resistance protein (TIR-NBS-LRR class) 511 681 - -
Seca9g06352 1525 SUPERFAMILY Toll/Interleukin receptor TIR domain 511 656 IPR035897 -
Seca9g06352 1525 Gene3D - 187 347 IPR027417 -
Seca9g06352 1525 Pfam TIR domain 515 679 IPR000157 GO:0007165
Seca9g06352 1525 Pfam TIR domain 13 150 IPR000157 GO:0007165
Seca9g06352 1525 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Seca9g06352 1525 SUPERFAMILY L domain-like 1003 1302 - -
Seca9g06352 1525 PRINTS Disease resistance protein signature 714 729 - -
Seca9g06352 1525 PRINTS Disease resistance protein signature 884 898 - -
Seca9g06352 1525 PRINTS Disease resistance protein signature 791 805 - -
Seca9g06352 1525 PRINTS Disease resistance protein signature 1193 1209 - -
Seca9g06352 1525 Gene3D - 354 437 IPR042197 -
Seca9g06352 1525 Gene3D - 849 933 IPR042197 -
Seca9g06352 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 944 IPR027417 -
Seca9g06352 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 445 IPR027417 -
Seca9g06352 1525 Gene3D - 509 680 IPR035897 -
Seca9g06352 1525 SMART till_3 514 653 IPR000157 GO:0007165
Seca9g06352 1525 SMART till_3 11 154 IPR000157 GO:0007165
Seca9g06352 1525 Gene3D - 11 184 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06352 Seca-Chr9 180563303 180573689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06352 63 504 WRKY Transcription Factor Family AT4G12020 25.499 7.92e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06352 - - pcin:129288830 1355.5