Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06350 ATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTCAAAGGTGATGAGAACATGCCCTCTTGTGACTCAACAACATCTTTCAACTCAACACATGGTCTATTATGTGGCTCTGTTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCTTCAACTAAGGGTGATGTTTATAGTTTTGGAGTACTTGTTCTAGAAATAGTGACAAGTAGACGCCCAACAAATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATTCACACAAGCTTGATAACATTGTTGAACAAGCATTTGCAAAGGTGTTTTCCTTCTGGCATGTCAACTCACTCTCACAAAATTGGGCAAGATGTTATATTGGAACTCATTGA 474 0.3945 MAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKGDENMPSCDSTTSFNSTHGLLCGSVGYIAPEYGMGKHASTKGDVYSFGVLVLEIVTSRRPTNVLIHEGSSLHEWVKRQYSHKLDNIVEQAFAKVFSFWHVNSLSQNWARCYIGTH. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06350 157 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 132 - -
Seca9g06350 157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Seca9g06350 157 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06350 157 Gene3D Transferase(Phosphotransferase) domain 1 1 153 - -
Seca9g06350 157 Pfam Protein kinase domain 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06350 157 SUPERFAMILY Protein kinase-like (PK-like) 1 120 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06350 Seca-Chr9 180553748 180554501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06350 1 136 Receptor kinase-like Gene Family AT3G47570 43.478 2.03e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca9g06350 Pkinase 4.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06350 - - rvl:131320356 219.164