Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06343 ATGAGGGTATTCAAACTCAGGTTTTTGGGATGTTCAGAGGGAAAATGGCTAATTCGTTATTCTTTCTTTATGTTTTTAGCAATTTCAACTCTGAAGGCGGCATTAGATAGATGCAGGGCACACAAATCTGAGGCAGTGTTGAACAAAGAGTGTGATAAGAATCAAGACTATGAACTAGACAATAAGAATAATGAAAAAGAAAGACAATATGTGGATGAGAAAGAGAAGGAAGATTCTGTTATCACTAGCAGGGCACTTTCCTCCTCACCTGAGAAGAAAAATTACCGGAAACTGTGGAAGTCATGGACACCAGAGTTGCATCGTAAATTTCTTGAGGCTTTAGAAGTGCTTGGAGGTTCTGAAGTGGCAACTCCAAAGCAAATTAGAGCAGTAATGAAGGTTGATGGCCTGACTAATGATGAAGTAAAGAGTTATTTACAAAAATACAGACTTCATAGAAGAAGAGTTCCACCTGCTAATCTGTCTGTTGAAATTCCTCAAAGTTTGTGGATTTACAGTAACTTCTCAAAGGATAGCAGTTGTGATTCTGATTCTGGTTCCAGTTCCAGTTCCGGTTCCGGTTCTCCTCAAGGTCCCTTTCAGTTAACAACAGAATCTGGGGAAGGGACATCCGCAACTAACATGGAAGAAGATGAAGATGTAAAATCTGAGTTAGAGCTGGAAAAACAACACTCACAAAACCTAGCTAGAAAAGATATTTTAAATTTCTCACCATGA 738 0.3889 MRVFKLRFLGCSEGKWLIRYSFFMFLAISTLKAALDRCRAHKSEAVLNKECDKNQDYELDNKNNEKERQYVDEKEKEDSVITSRALSSSPEKKNYRKLWKSWTPELHRKFLEALEVLGGSEVATPKQIRAVMKVDGLTNDEVKSYLQKYRLHRRRVPPANLSVEIPQSLWIYSNFSKDSSCDSDSGSSSSSGSGSPQGPFQLTTESGEGTSATNMEEDEDVKSELELEKQHSQNLARKDILNFSP. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06343 245 Pfam Myb-like DNA-binding domain 101 150 IPR001005 -
Seca9g06343 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 154 IPR017930 -
Seca9g06343 245 Coils Coil 47 67 - -
Seca9g06343 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 54 225 IPR044787 GO:0003700|GO:0006355
Seca9g06343 245 MobiDBLite consensus disorder prediction 181 211 - -
Seca9g06343 245 Gene3D - 99 155 - -
Seca9g06343 245 MobiDBLite consensus disorder prediction 181 245 - -
Seca9g06343 245 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 152 IPR006447 GO:0003677
Seca9g06343 245 SUPERFAMILY Homeodomain-like 96 155 IPR009057 -
Seca9g06343 245 Coils Coil 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06343 Seca-Chr9 180379038 180381280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06343 88 159 G2-like Transcription Factor Family AT2G03500 65.278 8.30e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g06343 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06343 - - gmx:100809323 139.043