Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06342 ATGTTTTTAGCAATTTCGGGTCTGAAGGCAGTGTTGAACAAAGAGTGTGATAAGAATCAAGACTATGAACTAGACAATAAGAATAATGAAAAAGAAATACAATGTGTGGATGAGAAAGAGAAGGAAGATTCTGTTATCACTAGCAGGGCGCTTTCCTCCTCACCATGGACACCAGAGTTGCATCTCAAATTTCTTGAGGCTTTAGAGGTGCTTGGAGGTTCTGAAGTGGCAACTCCAAAGCAAATTAGAGCAGTAATGAAGGTTGATGGCCTGACTGATGATGAAGTAAAGAGTTATTTACTAAAACACAGACTTCATACAAGAAGAGTTCGACCTCTTAATCTGTCTCTTGATATTCCTGAATGTTTGCGGATTTACAGAAAATTCTCAAAGGATAGCAGTTTTGATTGTGGTTCCAGTTCCAGTTCCAGTTCCAGTTCTCCGTTAACAACAGAATCTGGGGAAGGGACATCCGCAACTAACATGGAAGAAGATGAAGATGTAAAATCTGAGTTAGAGCTGGAAAAACAACACTCACAAACCTAG 546 0.3956 MFLAISGLKAVLNKECDKNQDYELDNKNNEKEIQCVDEKEKEDSVITSRALSSSPWTPELHLKFLEALEVLGGSEVATPKQIRAVMKVDGLTDDEVKSYLLKHRLHTRRVRPLNLSLDIPECLRIYRKFSKDSSFDCGSSSSSSSSSPLTTESGEGTSATNMEEDEDVKSELELEKQHSQT. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06342 181 Coils Coil 12 39 - -
Seca9g06342 181 SUPERFAMILY Homeodomain-like 54 109 IPR009057 -
Seca9g06342 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Seca9g06342 181 Gene3D - 53 108 - -
Seca9g06342 181 Pfam Myb-like DNA-binding domain 54 103 IPR001005 -
Seca9g06342 181 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 55 172 IPR044787 GO:0003700|GO:0006355
Seca9g06342 181 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 106 IPR006447 GO:0003677
Seca9g06342 181 MobiDBLite consensus disorder prediction 133 158 - -
Seca9g06342 181 MobiDBLite consensus disorder prediction 132 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06342 Seca-Chr9 180358001 180360052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06342 56 112 G2-like Transcription Factor Family AT2G03500 70.175 3.87e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g06342 Myb_DNA-binding 6.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06342 - - psom:113314215 97.4413