Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06341 ATGGATCGTTCTGCGACCATTGTTGGGCCAGGAATGGATATACCGATCATGCATGACAGTGACAGGTATGAGCTGGTCCGTGATATTGGGTCTGGAAATTTTGGGGTGGCCAGGCTCATGAGAGACAAGCACACTGATGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTGCAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATACTGACTCCTACACATTTAGCTATTGTCATGGAATATGCTTCCGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGCCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGCCATGCAATGCAAGTATGCCATCGTGATTTGAAATTAGAGAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCCTCAGTGCTGCATTCACAACCAAAATCTACAGTTGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTAAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCATGTGGGGTGACCTTGTATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCACCCGAGTGCCGTCATCTGATCTCAAGGATCTTTGTTGCAGATCCTGCACAGGTCAGTTTGTTTTTTAATTATTTTATCTTCCTGAAAAAGATATGTTCTTTACATGTAAGCCTATATATTTTCCTTGTAATGAGTTAA 885 0.4181 MDRSATIVGPGMDIPIMHDSDRYELVRDIGSGNFGVARLMRDKHTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECRHLISRIFVADPAQVSLFFNYFIFLKKICSLHVSLYIFLVMS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06341 294 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Seca9g06341 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca9g06341 294 FunFam Serine/threonine-protein kinase SRK2E 99 283 - -
Seca9g06341 294 Gene3D Transferase(Phosphotransferase) domain 1 99 268 - -
Seca9g06341 294 PANTHER SERINE/THREONINE KINASE 22 266 - -
Seca9g06341 294 ProSiteProfiles Protein kinase domain profile. 23 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06341 294 SMART serkin_6 23 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06341 294 Pfam Protein kinase domain 23 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06341 294 SUPERFAMILY Protein kinase-like (PK-like) 15 266 IPR011009 -
Seca9g06341 294 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Seca9g06341 294 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Seca9g06341 294 PIRSF ILK 13 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06341 Seca-Chr9 180350776 180355231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06341 22 266 CBL-interacting serine-threonine protein kinases AT5G25110 44.141 9.26e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca9g06341 Pkinase 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06341 K14498 - gmx:100804702 535.798