Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06331 ATGCCACGCCCTTCTTTCCACAAGCTTATTCTGCCCACAACACTCCAATCCAGGCAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGGGGGTCAGCTTTCAACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTGTTGGAGTAAAGAAGGCAGACAACAGAATTTTTTTCCTTGATGGTTGGCAAGAATTTGTTCAGCGCTACTCCATAGGTGTTGGATACCTTTTAGTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATATTTAATATGAGTACATCTGAGGTAAATTATCAATCAGCCATGAGAAGCCGTAATGAAGGACCTTGCTATGCAAATTATCATCATATTTTTGACGAAATGGAAGATACAGACTCCTTTGAATTTTTCGATTCGTCACCTTCAAACCTTACTCCTGGTGCATTGCAAAACAAGGTTTTTGCTGGATCTGTAGATCAAATGACACCTGGGAAGAGTCATACTCCTGCATTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTAAACTGGGGAGATAGTGGGAGCGCATTTTCTTCAAAAGGTGTCAACTCACAGGACATTCACTCAACCAGAGATATAGGTGTTCAGTTCAATGCTGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATTCTAATAACGAGGAAGGGGTTAATAAAACTGTACGAAAGAAGCGAAAATCAGATCCCAATGGCCAGGAACCCTCTGCTGAAAATGAAGATGAGGTAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCGGAAGAAAGAGAGAGGGCAATTAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGAGTTGTCCTGAGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTTCATGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATTAAACTTCAGATTGCCGATGGGAGGCAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTTACATTAGAGAACAATTTAGGGGAAGGTGATGTTTGTGTGTTTGAGCTGCTTACAACAAAGGATGTCGTGCTGCAAGTTACTACATTTCGTGTAATTGAGGATACAGGGTTGTTGAACCCTCCTATGCAGCAGAGCCAAAATGTGAGCCATACTAAAATGTTGAACCCTCACTTGCAGCATCGCGTCAGTACTACCAAAATGGTTAGAAATTAG 1299 0.4111 MPRPSFHKLILPTTLQSRQLRIPDNFLRKYGGQLSTIATLTVPDGSVWRVGVKKADNRIFFLDGWQEFVQRYSIGVGYLLVFMYEGNSSFIVHIFNMSTSEVNYQSAMRSRNEGPCYANYHHIFDEMEDTDSFEFFDSSPSNLTPGALQNKVFAGSVDQMTPGKSHTPALQNLFNGGSKLNRVNWGDSGSAFSSKGVNSQDIHSTRDIGVQFNAVEFKRSTEELKLRYSNNEEGVNKTVRKKRKSDPNGQEPSAENEDEVEMRYRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQIADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLTTKDVVLQVTTFRVIEDTGLLNPPMQQSQNVSHTKMLNPHLQHRVSTTKMVRN. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06331 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
Seca9g06331 432 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677
Seca9g06331 432 Gene3D - 276 396 IPR015300 -
Seca9g06331 432 MobiDBLite consensus disorder prediction 235 258 - -
Seca9g06331 432 Gene3D - 1 99 IPR015300 -
Seca9g06331 432 SMART B3_2 6 98 IPR003340 GO:0003677
Seca9g06331 432 SMART B3_2 299 394 IPR003340 GO:0003677
Seca9g06331 432 CDD B3_DNA 297 392 IPR003340 GO:0003677
Seca9g06331 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Seca9g06331 432 SUPERFAMILY DNA-binding pseudobarrel domain 292 392 IPR015300 -
Seca9g06331 432 PANTHER B3 DOMAIN-CONTAINING 3 383 - -
Seca9g06331 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Seca9g06331 432 Pfam B3 DNA binding domain 302 392 IPR003340 GO:0003677
Seca9g06331 432 Pfam B3 DNA binding domain 11 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06331 Seca-Chr9 180164070 180167371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06331 1 398 B3 DNA Binding Superfamily AT3G18990 52.323 3.31e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06331 B3 1.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06331 - - gmx:100789352 748.814