Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06330 ATGGCCGTGTCACTGTGGAGAGCTTCGTCGGCGTTCAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCGAGGTTACAAAAACCATTCCTCGCGATGCACGTGAGAGTATGATGTATTCTGATATAAACTCACAGATTGGGAGTTGCATGCCTCTTTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAAACCAGGGCAAGGTGGGAAGTTGGTGCGAGCAGCTGGAACAAATGCGAAGATCTTGAAAGAGCCAACATCCGCATACTGTTTAATCCAACTTCCCTCTGGTGTTAAAAAATTGATTGATTCTCGATGCAGGGCCACCGTTGGTACCGTCTCTAATCCAACCCATGGAGATCGCAAACTTAGAAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCGGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCACGGTGGAGGAGAGGGGAAGAGCAAGAGTAGTGGGCGATGGGGGCGAGGATCTCGCACACCTTGGGGCAAGCCTACAAAGAGTGGCTTCAAGACTGGTCCGCTCAAGCGCAGAAGGTAG 579 0.5009 MAVSLWRASSAFNLFTNALRRFSSEVTKTIPRDARESMMYSDINSQIGSCMPLSAMRIGTIIHNIELKPGQGGKLVRAAGTNAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKSGFKTGPLKRRR. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06330 192 Gene3D - 41 117 IPR014722 -
Seca9g06330 192 MobiDBLite consensus disorder prediction 146 192 - -
Seca9g06330 192 PANTHER RIBOSOMAL PROTEIN L2 40 191 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca9g06330 192 SUPERFAMILY Translation proteins SH3-like domain 47 181 IPR008991 -
Seca9g06330 192 SMART Ribosomal_L2_C_2 45 178 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca9g06330 192 FunFam 50S ribosomal protein L2 118 192 - -
Seca9g06330 192 FunFam 60S ribosomal protein L2, mitochondrial 41 117 - -
Seca9g06330 192 Pfam Ribosomal Proteins L2, C-terminal domain 46 176 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca9g06330 192 ProSitePatterns Ribosomal protein L2 signature. 140 151 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca9g06330 192 Gene3D Ribosomal protein L2, domain 3 118 192 IPR014726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06330 Seca-Chr9 180149687 180152844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06330 44 157 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 1.87e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06330 - - gmx:100792418 329.331