Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06304 ATGGGTCTATGTTTTGGTTCACTTTTTGTCCAAGCCCCACCCTCTTCCCTCTATATACCTAACAATTATATTGGGAATTCTCATTCACGGTGGAATTTCTTTGAAGGTTTAGTGAGTACAAGTTATATTGAAAAGAATAACGTGACAACATGTGGTTGTGTTCAAGTTTGGAAGAAGAAAAATGAGGTAACTACTAGAAGTCAGAAGCTTCTGGAAACTCGAAACTTGAATGTGTTTAGTTTTGCGGATTTGAAAGCGGCCGTCAAAGGTTTCAAGTCACATGCATTACTTGGAGAAGGTGGTTTTGGAAAAGTATATAAATGTTGGTTGGATGATAAGAAACTCGACCCTGCCAAAGCTGGTCATGGAATGATGGTAGCTATCAAGAAATTGAAACCACAAAGTATGCAAGGGATTCAAGAGTGGCAGGCAGAAATCAATTCTTTAGGAAGCATTTCCCACCCCAATCTGGTCAAGCTATTGGGTTACTGTAGGGAAGATGTCGAATTTCTTCTGGTGTATGAATTCATGCCAATGGGAAGCTTGGAGAATCACCTCTACAGAAGTATGAACTTAAAACAATTAAAGTGA 591 0.3909 MGLCFGSLFVQAPPSSLYIPNNYIGNSHSRWNFFEGLVSTSYIEKNNVTTCGCVQVWKKKNEVTTRSQKLLETRNLNVFSFADLKAAVKGFKSHALLGEGGFGKVYKCWLDDKKLDPAKAGHGMMVAIKKLKPQSMQGIQEWQAEINSLGSISHPNLVKLLGYCREDVEFLLVYEFMPMGSLENHLYRSMNLKQLK. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06304 196 SUPERFAMILY Protein kinase-like (PK-like) 64 190 IPR011009 -
Seca9g06304 196 FunFam Serine/threonine-protein kinase BIK1 58 176 - -
Seca9g06304 196 ProSitePatterns Protein kinases ATP-binding region signature. 97 130 IPR017441 GO:0005524
Seca9g06304 196 Pfam Protein tyrosine and serine/threonine kinase 94 189 IPR001245 GO:0004672|GO:0006468
Seca9g06304 196 Gene3D Phosphorylase Kinase; domain 1 60 176 - -
Seca9g06304 196 ProSiteProfiles Protein kinase domain profile. 91 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06304 196 PANTHER OS01G0588500 PROTEIN-RELATED 65 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06304 Seca-Chr9 179788721 179789915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06304 77 194 Receptor kinase-like Gene Family AT2G37710 48.361 5.48e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g06304 PK_Tyr_Ser-Thr 1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06304 - - cit:102629050 190.66