Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06300 ATGGAAAAGGTGGCTCCTCCTCTTCCTCCCATGTCGGTGCACGGTCTATTCTACGATTCGCCTTCCATGGCGAATAGCAAGAAGCGCGATCTGCCGTACGACGTCGTTTCACAGAACGAGAATTGGAACCCTAAGGAGTGGAATTGGGATAGCGTGAGATTCGTGGCGAAACCTGCAAGCAATAGAGTCTCAATTGAAGATGAGGGTTTGAGATTGAATCTCGGTGGTGTTGGTGGCGGTGCTGGAGGTGTCACTGTGAATAGGGCGAATAAGAGGGTGCGTTCGGGTTCCCCTGGAACGGCGTCGTATCCGATGTGTCAGGTGGATAACTGTGGAGAGGATCTATCGAAGGCGAAGGACTATCATCGAAGGCACAAGGTGTGTGAGGCTCACAGCAAGGCTTCGAAAGCGCTTGTTGCGAATCAAATGCAACGGTTCTGTCAACAGTGTAGCAGGTTTCACCCGCTGTCGGAGTTTGACGAAGGGAAGCGGAGCTGTCGCCGGAGACTTGCTGGACACAATCGTCGTCGAAGGAAGACGCAGCCAGATGAAGTTACCTCACCGCCCGCCGCCAACGGCGCTTCCTCAGCCGCCAATTTGGAAATTTTCAATTTGTTGACTGCAATAGCTGGAGGCTCCCAAGGAAAATTTGAGGACAGAAGGTCACAAGTTCCAGACAGAGAACAGCTTGTTCAGATTCTTAATAGGATACCTTTGCCTGCTGATCTTACAGCAAAGTTGCTGGATGCTGGTAATTTTAATGGGAAAAAAGATCAAGTGCAAATGCAAACTTCATCATCCTATGCTCATCATGATGACCAACTGAACCACACCCCCTCTGCCCCCTTAACTAAGGACTTACTTGCTGTTCTTTCATCCACTCTATCCTCATCTCCTCCCAATGCTGCTGCAGCATCACTCTCTGAAAATGGCAGCCACAGTAGCAATGGCAGTGGTGACAAGTCTGGGACTACTAGTGCTGACCAGACAAGAGGACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGTGGCAGTTCCCAGTCTCCAGTTGAAGATTCGGATAGCCAGGATGATGTTCGACTTAATCTACCCCTGCAACTTTTTAGCTCCTCTCCTGAAGATGACAGCCTGCCAAAATTGGCATCTTCCCGAAAGTATTTCTCGTCAGACAGTAGTAATCCTGTGGAAGAGAGGTCGCCATCGTCATCTCCTCCAGTTGTCGAGATGCAGTTTGGTTTGCTGGGTGGGGATAGAGGTCTCAGGCCCAAGAGCATGTCAACTGCAAGAGGAGGCAATGTTCAGAAGGAAGCTAGCCAAAGTCATAGTTATAATATCTCCCTTGATCTCTTTAAAGGGTCAAATAATAGGATCCAACAACCTAGCTCACTTCAAAGTGTTCCATTTCAACCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAAAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGGAACGTTGCGAACACAGATTTACAATTGGCTTTCTAGTAGGCCATCAGACTTGGAGAGCTACATAAGGCCTGGCTGTGTGGTACTATCAATTTACACTACAATGTCTTCTGCTGCCTGGGAGCAACTAGAGGAAAACTTCCTCCAACGTGTTCATTCATTAGTTCAAAATTCAGATTCTGATTTTTGGAGAAATGGAAGATTTCTAGTTCATTCTGGCAGTCAGTTAGCATCGCACAAAGATGGAAAGATACGCCTGTGCAAACCATGGAGAACGTGGAGGTCTCCAGAGTTGATATCTGTATCCCCTTTGGCAATTGTTAATGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAAGTCCAGGCACAAAGATTCATTGCACAGGTACTGGCTGTTACACATCGGCAGAAGTTATAGGATCTGCATATCCTGGTATGGCTTATGATGAGATAAAATTGGGCTGTTTTAAAGTTCAGAATGAATCTCCCGGTGTTCTGGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGCAACGAATTGAAACCACTTGAGTCTGAATTTGATTCGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAATATCATTTTGGGCGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTTTCATATGTGCCTGAGGTTCCAGATTATTCGCTTGACAGGTTCAAATTTGTACTCACGTTTGCTGTTGAAAGAAACTGTTGTATGTTAGTCAAAACCCTTCTGGATATGCTGGTTCATAAACACTTGGAAGGGGAATGGTTGTCAACAAGGTCAATGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTGCTCATCCACTACTCTATACCTAGCAAAAATGATACGTCCAGGAAATATGTGTTTCCACCAAATCTTGAGGGCCCTGGTGGTGTTACACCCTTGCACTTGGCAGCATGTACATCGTCTTCTGACGGTGTAGTTGACTCTTTAACGAATGACCCACAGGAGATTGGGTTAAAGTGCTGGGAATCCCTTGTGGATGCAAATGGGCAGACTCCACATGCCTATGCCATGATGAGGAATAATCACTCCTATAATGTGCTGGTTGCTCGGAAACTTGCTGATAGACAAAGAGGTGAAATTTCACTTAGAATTGACAATGAGATAGAGCAATCATCACTGAGAGTTGAGCTTACGCAAAAACAAAGTAACCAAGTCAAACAAGGTGAGAATTCTTGTGCCAAGTGTGCGACTGCAGCAATTCGCTACAACAGAAGAGTTTCAGGTTCACGAGGTTGGCTTCACCGCCCCTTCATTCATTCAATTCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGAACCCCTTACGTAGGTTCAAGTGGTCCCTTCACCTGGGAAAATTTGGATTATGGCACAATGTGA 3084 0.4559 MEKVAPPLPPMSVHGLFYDSPSMANSKKRDLPYDVVSQNENWNPKEWNWDSVRFVAKPASNRVSIEDEGLRLNLGGVGGGAGGVTVNRANKRVRSGSPGTASYPMCQVDNCGEDLSKAKDYHRRHKVCEAHSKASKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPDEVTSPPAANGASSAANLEIFNLLTAIAGGSQGKFEDRRSQVPDREQLVQILNRIPLPADLTAKLLDAGNFNGKKDQVQMQTSSSYAHHDDQLNHTPSAPLTKDLLAVLSSTLSSSPPNAAAASLSENGSHSSNGSGDKSGTTSADQTRGQQFTSVGGERSSGSSQSPVEDSDSQDDVRLNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPVEERSPSSSPPVVEMQFGLLGGDRGLRPKSMSTARGGNVQKEASQSHSYNISLDLFKGSNNRIQQPSSLQSVPFQPGYTSSGSDHSPPSLNSDAQDRTGKIMFKLFDKHPSHFPGTLRTQIYNWLSSRPSDLESYIRPGCVVLSIYTTMSSAAWEQLEENFLQRVHSLVQNSDSDFWRNGRFLVHSGSQLASHKDGKIRLCKPWRTWRSPELISVSPLAIVNGQETSISLKGRNLSSPGTKIHCTGTGCYTSAEVIGSAYPGMAYDEIKLGCFKVQNESPGVLGRCFIEVENGFKGNSFPVIIADATICNELKPLESEFDSEEKICDAISEEHEYHFGRPRSREEALHFLNELGWLFQRERFSYVPEVPDYSLDRFKFVLTFAVERNCCMLVKTLLDMLVHKHLEGEWLSTRSMEMLNAIQLLNRAVKRKYISMVDLLIHYSIPSKNDTSRKYVFPPNLEGPGGVTPLHLAACTSSSDGVVDSLTNDPQEIGLKCWESLVDANGQTPHAYAMMRNNHSYNVLVARKLADRQRGEISLRIDNEIEQSSLRVELTQKQSNQVKQGENSCAKCATAAIRYNRRVSGSRGWLHRPFIHSILAVAAVCVCVCVFFRGTPYVGSSGPFTWENLDYGTM. 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06300 1027 SUPERFAMILY Ankyrin repeat 774 918 IPR036770 -
Seca9g06300 1027 SUPERFAMILY SBT domain 104 185 IPR036893 GO:0003677|GO:0005634
Seca9g06300 1027 Gene3D - 96 167 IPR036893 GO:0003677|GO:0005634
Seca9g06300 1027 FunFam Squamosa promoter-binding-like protein 14 97 167 - -
Seca9g06300 1027 MobiDBLite consensus disorder prediction 298 353 - -
Seca9g06300 1027 MobiDBLite consensus disorder prediction 298 441 - -
Seca9g06300 1027 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Seca9g06300 1027 Pfam SBP domain 106 179 IPR004333 GO:0003677
Seca9g06300 1027 MobiDBLite consensus disorder prediction 169 193 - -
Seca9g06300 1027 MobiDBLite consensus disorder prediction 459 489 - -
Seca9g06300 1027 MobiDBLite consensus disorder prediction 259 280 - -
Seca9g06300 1027 Gene3D - 770 961 IPR036770 -
Seca9g06300 1027 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 811 IPR044817 GO:0003677
Seca9g06300 1027 MobiDBLite consensus disorder prediction 360 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06300 Seca-Chr9 179709337 179716218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06300 27 1027 SBP-box Gene Family AT1G20980 53.448 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca9g06300 SBP 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06300 - - gmx:100819004 1556.19