Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06292 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAATTGCATCGTTGCTTTGTTTATGCCATTGAGACTCTTGGTGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAGGGGCTAACAATTTCACATGTCAAGAGCCACCTTCAGATGTACAGAAGCATGAGAGGTGACTCTTGCAGACAAGATAGGACTTCCACCCAACAAAAAAAACAATCTTTTCAGGAGCATGATGATGGGTGTGGTGATGAAGTCAATGATGTTGGTGTTCACTCTTGTTTTAAACCCATTGCAAAAGAATCTGATTCCCTCTTCAGCTACAGTAATTTCCCCTCAAAAAGAGCCAGAATAGAGAAGACAAGTTCCCTCTCAGGAATCATAGAATGCAGCCAAAGAATAAGTGAAGCAGTTCCAAATCCATACACAACTTTTTATGATTATGTGCAGGCCATGGTTCAGCAGCAGAAGGGAATAAAAAAGATTTGTGTTGGTTCAATATGGCAAACCCAATCCAATTCCAAAATCTTTCCTATGCTACCAAAGCAAGAAACTGATTTGCTCCAGGTTTCCAAGTTAAATGACAAACAGCCTTTGAATGAAGGGAACACTAGGAGGGTAAATGCAAAAGATGAAGATATAGGAGATTGTGAGTTGTCACTGTCAATCTCATTACCCCATCCTTCAACCTCTCAGAGAAGTAATGGTTCTTCAGCCAATGAGATTAGAGGCTCTGGATTTAGCAACTACATGGGGTGCTCCAGTTCTTCCTCTGTCCAAAACAGAGTTAACTTAGACCTATCTTTAGCCATTTGA 867 0.4118 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDSCRQDRTSTQQKKQSFQEHDDGCGDEVNDVGVHSCFKPIAKESDSLFSYSNFPSKRARIEKTSSLSGIIECSQRISEAVPNPYTTFYDYVQAMVQQQKGIKKICVGSIWQTQSNSKIFPMLPKQETDLLQVSKLNDKQPLNEGNTRRVNAKDEDIGDCELSLSISLPHPSTSQRSNGSSANEIRGSGFSNYMGCSSSSSVQNRVNLDLSLAI. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06292 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Seca9g06292 288 Gene3D - 18 74 - -
Seca9g06292 288 MobiDBLite consensus disorder prediction 74 98 - -
Seca9g06292 288 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Seca9g06292 288 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Seca9g06292 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Seca9g06292 288 MobiDBLite consensus disorder prediction 75 98 - -
Seca9g06292 288 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 187 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca9g06292 288 FunFam Myb family transcription factor 17 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06292 Seca-Chr9 179597082 179601702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06292 1 74 G2-like Transcription Factor Family AT1G14600 72.152 5.26e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g06292 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06292 - - gmx:100810994 426.787