Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06291 ATGGCAGCACCTTTTTCAACAGCATCGTTGTTTGGAGTAAGAGAAGAGGAACAGAATCAGATGAATCAACAGCAGCATTCCTCAACACCATCAGGATCAGCAAATCCAACTGCACCACCTCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTCCCTTGGAAGCTAAAGCAGAAAACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAACACTATTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCCAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCCAGACGAGACAGTTTCATCACCCACAGAGCCTTCTGTGATGCATTGGCACAGGAAAGTGGAAGACAGCCATCCAATAATACCCTCATCAACAGTGCTGCCATTAGCAACCAACTGTATGGAGGAAGTAGCAACCTATCTTCCTTAACCTTATCCCAAATCCCTCATGATCATAACAACCACCAAAACGACAACCACCTCTTGCGTTTTGGCAGTGCAACAACCCTTCCCCAATTTAACCACCACATCCTCTCACCACAACAGATGACCACCACCCCCCCTCCTCCTTCATCATTCTTCAACATCCCTGAAACAACCCAAACCCAAAATTACCATCATGACCCTCACACTCAACAAGGGTTTGTTATGCCATTGCCACCATCAAACAAGCCAACAACATTCCAGCAAGGGCTATACTGTGATCATTTCAACATGATGAATAATAATAACAATGAAGGATCTTCTAGCTTCTTCTCTCCAATGATGATGGCTGCTGTTGCTGCTGGTGATCATCATCAAACAAGCATGAGCACTATGTCTCCTCACATGTCAGCAACAGCACTGCTTCAGAAAGCTGCACAAATTGGTGCAAGTTCAAGCAATAACAACAACAACACTGCCTCATCATTGCTTAGAAGCTTTGGAAGCACCTCTTCTAATTCCTCTAATCCAAACATGCAAGAGGTGATGAACTCATTTGCAGCAGGGGTTACTACTGGGTTTCAACCATATGGTGATCATATTCATGGCATTATCAATGAAGAAGGAGAAGAAGCAAAGAAACTGCAACAAACAGTAGTAGTGAGTGGTGGTGTTGGAGGATCTGAGAGGCTCACTAGGGATTTTCTTGGAGTTGGTGGTCAGAATCAGAATCAGATAGTGAGAAGCATCAGTGGAAGAGTTTCACAGCAGAGAGAAGAAGAAGAAAAACAAGAAGGAAGGTTCAATGATGCTGCGCCGTCAGGTCAATCTTTTGGAGGGAACTTTCAGTGA 1539 0.4444 MAAPFSTASLFGVREEEQNQMNQQQHSSTPSGSANPTAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESGRQPSNNTLINSAAISNQLYGGSSNLSSLTLSQIPHDHNNHQNDNHLLRFGSATTLPQFNHHILSPQQMTTTPPPPSSFFNIPETTQTQNYHHDPHTQQGFVMPLPPSNKPTTFQQGLYCDHFNMMNNNNNEGSSSFFSPMMMAAVAAGDHHQTSMSTMSPHMSATALLQKAAQIGASSSNNNNNTASSLLRSFGSTSSNSSNPNMQEVMNSFAAGVTTGFQPYGDHIHGIINEEGEEAKKLQQTVVVSGGVGGSERLTRDFLGVGGQNQNQIVRSISGRVSQQREEEEKQEGRFNDAAPSGQSFGGNFQ. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06291 512 SMART c2h2final6 112 142 IPR013087 -
Seca9g06291 512 SMART c2h2final6 71 93 IPR013087 -
Seca9g06291 512 SMART c2h2final6 147 167 IPR013087 -
Seca9g06291 512 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Seca9g06291 512 MobiDBLite consensus disorder prediction 483 497 - -
Seca9g06291 512 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca9g06291 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 482 IPR031140 -
Seca9g06291 512 MobiDBLite consensus disorder prediction 1 56 - -
Seca9g06291 512 Gene3D Classic Zinc Finger 125 203 - -
Seca9g06291 512 MobiDBLite consensus disorder prediction 480 512 - -
Seca9g06291 512 MobiDBLite consensus disorder prediction 12 48 - -
Seca9g06291 512 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Seca9g06291 512 Gene3D Classic Zinc Finger 50 119 - -
Seca9g06291 512 FunFam protein indeterminate-domain 12-like 50 118 - -
Seca9g06291 512 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Seca9g06291 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Seca9g06291 512 MobiDBLite consensus disorder prediction 378 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06291 Seca-Chr9 179536169 179540492 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06291 10 210 IDZ Gene Family AT2G02070 78.095 1.20e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g06291 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06291 K25870 - gmx:100807789 500.36