Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06286 ATGGCTTCTGCTTCCTCATCCACACCTTTCTTGGAAATCAGACAAGAAAATCAGATGACACAACACCAATTATCTTCCACAGCTGCTTCCTCAACAACTGCTGCTCCACCTGGTGTAGTGCCTCCAAAGAAAAAGAGGAATCAGCCTGGAACTCCATGCAAGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTCCCTTGGAAGCTAAAGCAGAAAACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAACACTATTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACTAGGGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGATAGTTTTATCACTCATAGGGCTTTTTGTGATGCATTAGCTCATGAGAGTGCAAGACACCCTTCCAACTTGAACCCTTTGGGAACTCCTCATCTCTATGGCACCACAAACCACATGACCTTAGGCCTATCCCAACTTCAACAAAACCATAACACCAACCCCCAAGCAGCCACCAACAACAACAGCATCTTAAGCCTAGGCAACACTGCACCACCAAAATATCATGAACACTTAATCTCACCTATGCATCAATCACCATTTGCCACACACTCATCATCCCAATCACCAGCTTTCTTCATAACTGACCCAAATCAAGGATTTCATCATCAAGACCTCACATCTCAACAACAACAAGGAGGAGGACAATTATTTTCAAACAAGCAACTGCATGGCCTCATGCAACTTCCTGATCTTCAAGGGACAACAACAAATAACAACACCACCACTACTACTTCTGCATTCAACCTCAGCTTCTTCCCAAATAGCAATGATCATCAATTCAACAACATAACTAGCCAAGGAAGTGCAACACTCTACAGTACTAATAATAACACTGTTGGTGGTTCAGGTTTGTCTTCACTCTTTGTGAATTCAGAGAACATGTCCCCACACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAACAACCAACAACAATGCAGTTTCAGCTTCTTCTCTACTAAGAGGAATGGGTGGTGGTGGTGGTGGTGGTTCTTCCTCAACCAATGGTGCAGATTCTGATCATCACAGTAACCAACTTAACAATCTTGCCACCTTTGGAAATGATAATAGGGTTGATGAAAATGAGCATCACCACCATCTACGTGGGTTGATGAACTCTTTTGCCAATGGAAATACTTCAATGTTTGGCAATGTGAAAGGAGAAAACAGCAACCTTGGTGGTCAGTTTCATCAGGAGCCAAAAAAGTTGTCACAAAATCTTGGTGGTGTGTGCTTTGGAGGGTCTGATAAGTTGACTTTAGACTTTCTTGGTGTTGGAGGAATGGTGAGGAACATGAATAGTAGTAGTGGTAATGGTGGTGGGTTTTCACAAAGAGATCAGCAACTACATTCCATGGGTACAATGAGCTCCTTGGATCCTAAAATGGAATCAACACATGGAAACCAACCTTTTGGAAGCTCAACACTGCAATGA 1683 0.4332 MASASSSTPFLEIRQENQMTQHQLSSTAASSTTAAPPGVVPPKKKRNQPGTPCKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTPHLYGTTNHMTLGLSQLQQNHNTNPQAATNNNSILSLGNTAPPKYHEHLISPMHQSPFATHSSSQSPAFFITDPNQGFHHQDLTSQQQQGGGQLFSNKQLHGLMQLPDLQGTTTNNNTTTTTSAFNLSFFPNSNDHQFNNITSQGSATLYSTNNNTVGGSGLSSLFVNSENMSPHMSATALLQKAAQMGSTTTTNNNAVSASSLLRGMGGGGGGGSSSTNGADSDHHSNQLNNLATFGNDNRVDENEHHHHLRGLMNSFANGNTSMFGNVKGENSNLGGQFHQEPKKLSQNLGGVCFGGSDKLTLDFLGVGGMVRNMNSSSGNGGGFSQRDQQLHSMGTMSSLDPKMESTHGNQPFGSSTLQ. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06286 560 Gene3D Classic Zinc Finger 55 99 - -
Seca9g06286 560 SMART c2h2final6 96 126 IPR013087 -
Seca9g06286 560 SMART c2h2final6 131 151 IPR013087 -
Seca9g06286 560 SMART c2h2final6 55 77 IPR013087 -
Seca9g06286 560 MobiDBLite consensus disorder prediction 400 426 - -
Seca9g06286 560 MobiDBLite consensus disorder prediction 1 34 - -
Seca9g06286 560 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 523 IPR031140 -
Seca9g06286 560 MobiDBLite consensus disorder prediction 411 426 - -
Seca9g06286 560 Pfam Zinc-finger double-stranded RNA-binding 54 77 IPR022755 -
Seca9g06286 560 SUPERFAMILY beta-beta-alpha zinc fingers 55 151 IPR036236 -
Seca9g06286 560 Gene3D Classic Zinc Finger 109 188 - -
Seca9g06286 560 MobiDBLite consensus disorder prediction 537 560 - -
Seca9g06286 560 MobiDBLite consensus disorder prediction 1 48 - -
Seca9g06286 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Seca9g06286 560 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Seca9g06286 560 FunFam protein indeterminate-domain 5, chloroplastic-like 109 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06286 Seca-Chr9 179489531 179494223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06286 54 516 C2H2 Transcription Factor Family AT2G02080 45.702 1.45e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g06286 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06286 K25870 - gmx:100806198 616.69