Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06284 ATGAAGCCCGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCCCGAGTTCTCAAGAGACCTCGCTCTTCTCCTTCTCCGCCACCGATCGAGTCCTTCGCTTTCACCTCCAATAACCGCCACAAAGCCGAGGTATCGGCTTCCAGCGACGACGACGGCGACGATTGCGTCGAAATCACGCAACACTCCGCGAGTTTTCCGGAAAGCCTCGACGACCTGGAGGATGCTGACGTGAACGACGACAAGGGCGGGGGAGGAGGTCATGCCGCAGCGAGCCGCGGCCGGCGGTTTATAATTGACGACGACGATGAAGAGGAGCACGACGGCGGGGATAGGAACGGAGGTGCTGTGGAATTGTACGACGTAGGGTCCAGCGAGGAGGAGGAAGAGGAGGAGGTGGATGAAAGTGACGTGGTTGGTAGGGCTTTGCAAAAGTGCGCGAGAATCTCTGCGGAGTTGAAGGGCGAGCTGTACGGGTCTTCGGGGACCGCTTGCGAGAGGTATTCAGAGGTGGAATCTTCTTCAGTGAGAATCGTAACTCAGGAGGATGTTGATGTTGCATGTGGATCTGAGGATTCAGATTTTCAGCCTCTGCTCAAGCCTTATCAGCTGGTTGGCGTCAATTTCTTGCTGCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGTAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGCCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCATGGAGCTGGACGTGCAGCATACTTCAAAGAGTTGAACTCCTTGTCCAAGGCGGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAGGATGATCGTAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGATCATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAGCGCTTGATGTTAACAGGGACACCGCTTCAGAATGATCTACATGAGTTATGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTGCTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATATTAGGTCCATTTATTTTGCGACGTCTGAAATCTGATGTGATGCAGCAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATAGCAAAATGTTCTGAGCTTAACTCAAAAAATGTTCTCGAAGTTATTCCTCGACGACAAATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGCTGATAAGGAGAATTTATAATGATGAGGATGTCATTCGCTTTGCTAGGAAGCTGCATCAGATAGGTGCTTTTGGCTTTGAGTGTACTTTTGACAGAGTTAAAGAGGAACTTAAAAGTTACAATGACTTTTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTTCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAGTGGACATCAATGCTTGACATATTGGAATGGACTTTGGATGTCATTGGGTTGACCTATAAACGGCTCGATGGAAGTACGCAGGTAGCTGAGAGGCAAACAATAGTTGATACATTCAATAATGATCCTTCAATATTTGCATGCTTGCTTTCTACGAGAGCTGGTGGACAAGGCTTAAACTTAACAGGAGCTGATACTGTTGTAATTCATGATATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCGAAGAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAAATTACTGAAGGTGATATTCCTGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTGAGTTAA 2265 0.4494 MKPELYEISDDEWENHSFKPSRVLKRPRSSPSPPPIESFAFTSNNRHKAEVSASSDDDGDDCVEITQHSASFPESLDDLEDADVNDDKGGGGGHAAASRGRRFIIDDDDEEEHDGGDRNGGAVELYDVGSSEEEEEEEVDESDVVGRALQKCARISAELKGELYGSSGTACERYSEVESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYFKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVIMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQEHAYKEAIEEYRAVSQARIAKCSELNSKNVLEVIPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHQIGAFGFECTFDRVKEELKSYNDFSIHRLLLHYGVNDRKGILSDKHVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDPSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEITEGDIPEKTMGEILSAILLS. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06284 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 735 IPR027417 -
Seca9g06284 754 Gene3D - 442 750 IPR027417 -
Seca9g06284 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 396 IPR014001 -
Seca9g06284 754 Pfam Helicase conserved C-terminal domain 581 693 IPR001650 -
Seca9g06284 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 751 IPR001650 -
Seca9g06284 754 SMART helicmild6 610 693 IPR001650 -
Seca9g06284 754 MobiDBLite consensus disorder prediction 1 123 - -
Seca9g06284 754 CDD SF2_C_SNF 571 704 - -
Seca9g06284 754 SMART ultradead3 201 406 IPR014001 -
Seca9g06284 754 Gene3D - 175 419 IPR038718 -
Seca9g06284 754 FunFam Protein CHROMATIN REMODELING 19 isoform A 176 454 - -
Seca9g06284 754 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g06284 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 431 IPR027417 -
Seca9g06284 754 MobiDBLite consensus disorder prediction 35 49 - -
Seca9g06284 754 Pfam SNF2-related domain 225 511 IPR000330 GO:0005524|GO:0140658
Seca9g06284 754 PANTHER SNF2/RAD54 HELICASE FAMILY 131 730 - -
Seca9g06284 754 CDD DEXHc_Snf 205 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06284 Seca-Chr9 179393870 179406377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06284 226 732 RAD5 or RAD16-like Gene Family AT5G22750 27.157 5.52e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g06284 SNF2_N 4.7e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06284 K14439 - gmx:100806323 1257.66