Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06278 ATGAATGTGTTCTCTCTCTTAGCTGGAGAGGTAAAACTGGTTGTGAGGCCACCTTTTCAATGCAGTACAGATCTATGGATGTATCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATGAGAAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGTATGAATCACGAAGCTTTCATGCTTGGAACTTCTAAGGGAAAATACTTAAATAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTGTTGTTTTTGGCCGGGTCGTCAAGGGAGAGGATGTAGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATAATTGATGTGGCTCTTAGACAGATGATGTGA 447 0.3982 MNVFSLLAGEVKLVVRPPFQCSTDLWMYQKGHFKGMLFHQVIKHYVIQAGHEKGPGATEDWNLRGKKYTSMNHEAFMLGTSKGKYLNKGFDLFITTAPIPDLNEKLVVFGRVVKGEDVVQEIEEVDTDEHYQPKISIGIIDVALRQMM. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06278 148 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 29 147 - -
Seca9g06278 148 Gene3D - 8 147 IPR029000 -
Seca9g06278 148 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 144 IPR002130 GO:0000413|GO:0003755
Seca9g06278 148 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 142 IPR002130 GO:0000413|GO:0003755
Seca9g06278 148 SUPERFAMILY Cyclophilin-like 27 144 IPR029000 -
Seca9g06278 148 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Seca9g06278 148 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 38 50 IPR002130 GO:0000413|GO:0003755
Seca9g06278 148 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06278 Seca-Chr9 179306473 179309985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06278 18 144 U-box Gene Family AT5G67530 26.119 1.88e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06278 - - gmx:100796043 228.794