Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06277 ATGAAAAAGAGTTTGGGCCTCATGAGAGCGTTACTGGTATTCTTCTTGCTGCTCCGGCAAAGCAGTAGTACCGTTGAGCAAGATCAGTCCTGTCCCCTTTCTTCCTGTGGCAAAATCTCCAACATAAGCTATCCGTTTAGATTAAAAGATGATCCAGAAGGCTGTGGCAACAGCAGTTACGAGCTAGCTTGTGAAAATAATGTGACTGTGTTATACTTGTACTCGGGAAGATTTTATGTGCAGGCCATCAACTACAAGAATTTCACAATCCGGCTGGTTGATCCCGGAATTCAACAAGATAACTGCTCCTCCCTTCCTCGCTATTTCTTGTCTCAATCTAATTTCACTGGTACTTATAGTTATAGCGATTTCATCAATTATTACACGGATCCATACCAAGCCTATCAAGAAAGACGAATTTTAGATTCATCTTCATCATCAGAGTATGATTATCAGCGTCTTTTCCAGCATGTAGTGTACTTGAACTGTACCAATCCAGTGAGTGACAATCCGAAATATGTGGACACTGCTTCCTCCTGTGTCAATTGGCGCTCCAAATCCAAAGGCCATATTTATGCTATTGCTGGCGATTTATTGGCTAAGGACTTTCGAGTTGATTGCCTTGTGAAGGTAGTTACTCTCACATCTAATTTGGACAGATCAAATGAATTTTCTTACCCTTTGATGCACAGAGCGCTACTCTATGGATTTGAGATTTCATGGATGGCTCTTCCCTGTCAGGATCACTGTCGAGGACATCCAAGCTCCTGCATCTACGACTCTTCCAGCGAAAAACTTGAATGTCCTTCGCGCTACTGCCATAATTTTCTCGGTGGTTATTATATGGACGTTTGTGGACTGCTTGAACTAATAAAAGGACCAAACCCAAACTATGAAGGTGTCACCCAGTATAAATTAGGATTGGTCACAGGACACTATGTTCTACCATCATTCTGGGCAGCCAGATTTCTGTTTGGCGTGACATTATATGTTGCGTTTTTGGTATACAAATGGAGAAAAAGGCATTTATCAATTTATGAAAATATTGAAATATATCTTCAACAAAATAGCATGATGCCCATCAGATACTCATACAAAGAAATTAAGGTCATGGCTAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCTCTGTTTTCAAGGGGAACCTGCGTAGTGGGCCTTGTGTGGCAATAAAGATGTTGAGCAAATCCAAAGGTAATGGTCAAGACTTCATTAGTGAAGTAGCAACCATTGGAAGGATACATCATTTGAATGTGGTACAATTAATTGGATTTTGTGTGGAAGGATCTAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAGTTCATTTTCTCTAAAGAAGGAAGTATGCATTTAAGCTATGACAAAATATATGACATATCAATTGGAGTAGCTCATGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTCTACATTTTGATATCAAACCCCATAACATCCTTCTTGATGAGAACTTCACTCCAAAGGTCTCTGATTTTGGGTTGGCAAAGTTGTATTCTGTGGATAATAGCTTTGTCACAATGACTGCAGCAAGAGGGACAATTGGGTACATGGCTCCAGAATTGTTCTACAAAAATTTTGGAGGAGTGACCTATAAGGCTGATGTCTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGGAAAAACTTGAATCCCCATGTGGAGCATTCTAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGGAAAAGAGGAAGAGATTGAGATGGAAGATGTCACAGAAGAGGAAAAGAAAATGGTGAAGAAGATGATTATAGTTGCACTTTGGTGTATACAATTGAAGCCAGATGATCGACCCTCAATGAGGAAAGTGGTGGAAATGCTTGAAGGAGATGTTGAAAGCCTTGAAATGCCTCCAAAGCCTTCTCTGTATCCACATGAAACGATTACAACAGGGGATCAAAGCATCAACTCTGAGCAAACAACATCGAGTGACAACATTAGTTCTTCTGGTGATCCTGTGGAAATTGGAACTAATCCTTTGGTAGAGAATATTCCTTGA 2106 0.4022 MKKSLGLMRALLVFFLLLRQSSSTVEQDQSCPLSSCGKISNISYPFRLKDDPEGCGNSSYELACENNVTVLYLYSGRFYVQAINYKNFTIRLVDPGIQQDNCSSLPRYFLSQSNFTGTYSYSDFINYYTDPYQAYQERRILDSSSSSEYDYQRLFQHVVYLNCTNPVSDNPKYVDTASSCVNWRSKSKGHIYAIAGDLLAKDFRVDCLVKVVTLTSNLDRSNEFSYPLMHRALLYGFEISWMALPCQDHCRGHPSSCIYDSSSEKLECPSRYCHNFLGGYYMDVCGLLELIKGPNPNYEGVTQYKLGLVTGHYVLPSFWAARFLFGVTLYVAFLVYKWRKRHLSIYENIEIYLQQNSMMPIRYSYKEIKVMAKGFKDKLGEGGFGSVFKGNLRSGPCVAIKMLSKSKGNGQDFISEVATIGRIHHLNVVQLIGFCVEGSKRALVYEFMPNGSLDKFIFSKEGSMHLSYDKIYDISIGVAHGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYSVDNSFVTMTAARGTIGYMAPELFYKNFGGVTYKADVYSFGMLLMEMASKRKNLNPHVEHSSQLYFPFWIYDQLGKEEEIEMEDVTEEEKKMVKKMIIVALWCIQLKPDDRPSMRKVVEMLEGDVESLEMPPKPSLYPHETITTGDQSINSEQTTSSDNISSSGDPVEIGTNPLVENIP. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06277 701 MobiDBLite consensus disorder prediction 662 690 - -
Seca9g06277 701 ProSiteProfiles Protein kinase domain profile. 373 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06277 701 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Seca9g06277 701 Pfam Protein tyrosine and serine/threonine kinase 375 643 IPR001245 GO:0004672|GO:0006468
Seca9g06277 701 FunFam serine/threonine-protein kinase PBS1-like 344 447 - -
Seca9g06277 701 FunFam PR5-like receptor kinase 448 655 - -
Seca9g06277 701 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Seca9g06277 701 SMART serkin_6 373 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06277 701 SUPERFAMILY Protein kinase-like (PK-like) 356 644 IPR011009 -
Seca9g06277 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Seca9g06277 701 MobiDBLite consensus disorder prediction 648 701 - -
Seca9g06277 701 Gene3D Transferase(Phosphotransferase) domain 1 448 658 - -
Seca9g06277 701 Gene3D Phosphorylase Kinase; domain 1 347 447 - -
Seca9g06277 701 PANTHER RUST RESISTANCE KINASE LR10-RELATED 346 668 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06277 Seca-Chr9 179297901 179301845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06277 320 677 Receptor kinase-like Gene Family AT4G18250 48.649 1.59e-109 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g06277 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06277 - - gmx:100305367 901.738