Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06275 ATGGATTCTCTTCTCTCTTCTGAAAACCGGAACCCAACCTTCCCTTCTGCACCACCCGGAATCCCAACCCCAATAGTAACCCCAAAGCTTGAACCTTCAGACGAATGGGTCGCACCGACCCCACCCGGTTTCTCAAACGGGTCCCACCAACTCGACCTCAACCTCTTCTGCAACGAAACCCTAACCGGTGGCTTCTCCGACCACCGCACTGCCACCAACAACAACGACAATTTGTACTCTGAGTTCAACCGAGTCTCCGAGCTCTTTCGAACCGCCATGGGCCTTCAGCAATCCCAAAACGACACCGTTCCGGACCCGGATTCGCGCGCAATCGTTCCGGTTCCACCGCCGCAGGAGAACAACAACAGCACCGATGGAAACCCTTCGTCGGTGGCCGTCGTGACTCCGCGGCAGCGGAAATGGAAGGAGCTGGTGAGGGTGACTGATGTCGGTGTGATGGATCAGCGGCACTTCCGCGACGTGGTTCGGAGGACTCGAATGGTGTACGATTCGCTTCGTGTGTTAGCGGCTGCAGAAGAAGAGGGAAGGATGGATGTGCGGAGGGTGAGGAGCGATTTGAGGGCTTCGGCAGTGATGAGAAACTGTGGGTTGTGGCTGAATCGTGATAAAAGGATAGTTGGGGCAATTCCAGGGGTTTGCATTGGTGATGTGTTTCTTTACAGGATGGAATTGTGTGTGGTTGGTTTGCACGGTCAACCACAGGCTGGGATTGATTATCTACCTGCTAGCATGAGTTCAAATGGTGAACCAATTGCCACTAGTGTTATAGTCTCTGGTGGGTATGAGGATGATTTGGATGAGGGTGATGTGATCATCTATTCTGGTCATGGTGGTCAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGAGGGAACCTTGCTATGGAGAGAAGCATGCATTATGGGGTTGAAGTGAGGGTTATTCGCGGGGTTCGGTGTGAGGGGACTGCTGCTGCTTCTGGTAAGGTCTATGTTTATGATGGGTTGTATAGGATTCTTGAGTGTTGGTTTGATGTTGGCAAGTCTGGTTTTGGTGTTTATAAGTATAAGCTGTGGAGGATTGATGGGCAGGCTAAGATGGGTAGTATGGTTATGAAGGAAGCTCTTATGCTTAGGAGAGATCCATTGAGTTTTAAACCGATGTGTTGCCTGTCTCTTGATGTTTCCAACAGGAAGGAGAATGTTCCCGTGAGGCTTTTCAATGACATTGATCGGAATCATGATCCTCTTTGTTATGAGTACCTTGCAAAGACTACTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAGGGCCACAGGTTGTGAGTGCGTGGACGGTTGTATGGATGGATGCTTTTGTGCCATGAAGAACGGAGGAGAGTTTCCTTATAGTCAAAATGGGATTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGCGGCCCTTTTTGTGGCTGTCCTCCTCATTGTCGGAACCGTGTCACGCAAAAGGGGCTGAAAAATAGGTTGGAAGTATTTAGATCAAGGGATACTGGTTGGGGAGTTAGGTCCTTGGATCTTATTCAAGCTGGAGCTTTTATCTGTGAGTACACTGGGGTTGTTCTGACTAGGGAGCAAGCACAAATTTTGACCATGAATGGTGATACATTGATATATCCAAATCGATTTACTGATAGGTGGGCTGAATGGGGGGATTTGTCTTTGATAGACTCCAATTATGTCCGGCCTTCATATCCATCAATTCCTCCTTTAGATTTTTCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATCAGTCATAGTTCAACTCCTAATGTCTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAGCATCCCTCCAATGAGAGAGCTTAGCCTTGATTATGGGGTAGCTGATGAGTTGACAGGCAAGCTCTCTATATGTAACTGA 1980 0.4783 MDSLLSSENRNPTFPSAPPGIPTPIVTPKLEPSDEWVAPTPPGFSNGSHQLDLNLFCNETLTGGFSDHRTATNNNDNLYSEFNRVSELFRTAMGLQQSQNDTVPDPDSRAIVPVPPPQENNNSTDGNPSSVAVVTPRQRKWKELVRVTDVGVMDQRHFRDVVRRTRMVYDSLRVLAAAEEEGRMDVRRVRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDLDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGVEVRVIRGVRCEGTAAASGKVYVYDGLYRILECWFDVGKSGFGVYKYKLWRIDGQAKMGSMVMKEALMLRRDPLSFKPMCCLSLDVSNRKENVPVRLFNDIDRNHDPLCYEYLAKTTFPQFVFHQSGRATGCECVDGCMDGCFCAMKNGGEFPYSQNGILLRGKPIIFECGPFCGCPPHCRNRVTQKGLKNRLEVFRSRDTGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDTLIYPNRFTDRWAEWGDLSLIDSNYVRPSYPSIPPLDFSMDVSRMRNVACYISHSSTPNVLVQFVLYDHNNLMFPHLMLFAMESIPPMRELSLDYGVADELTGKLSICN. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06275 659 Gene3D SET domain 372 659 IPR046341 -
Seca9g06275 659 ProSiteProfiles SET domain profile. 503 646 IPR001214 GO:0005515
Seca9g06275 659 MobiDBLite consensus disorder prediction 1 32 - -
Seca9g06275 659 Pfam SAD/SRA domain 213 367 IPR003105 -
Seca9g06275 659 SUPERFAMILY PUA domain-like 195 377 IPR015947 -
Seca9g06275 659 SMART G9a_1 209 367 IPR003105 -
Seca9g06275 659 MobiDBLite consensus disorder prediction 97 135 - -
Seca9g06275 659 Gene3D - 211 371 IPR036987 -
Seca9g06275 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 84 647 - -
Seca9g06275 659 ProSiteProfiles YDG domain profile. 214 363 IPR003105 -
Seca9g06275 659 SMART set_7 503 652 IPR001214 GO:0005515
Seca9g06275 659 Pfam Pre-SET motif 399 495 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g06275 659 Pfam SET domain 514 646 IPR001214 GO:0005515
Seca9g06275 659 MobiDBLite consensus disorder prediction 115 134 - -
Seca9g06275 659 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 68 659 IPR025794 GO:0016571
Seca9g06275 659 ProSiteProfiles Pre-SET domain profile. 442 500 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g06275 659 SUPERFAMILY SET domain 387 647 IPR046341 -
Seca9g06275 659 SMART preset_2 395 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06275 Seca-Chr9 179200515 179202494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06275 117 648 Su(var)3-9 homologs AT5G04940 37.085 1.35e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g06275 SAD_SRA 4.8e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06275 K11420 - gmx:100804592 1061.98