Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06273 ATGACTTGTAACAGGCGAAAGAAGCGTTCTGTTCCCTCTGCTGCAAATGCAATCCGTTTCTTTAAGATTATTACAACAACATGTCTTGATGCTGCAAAGCTTAAAGTTCTATATATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGATATGTCAAACCCTACATTTCTCAAGCCTCCAGATGGCACTGAATGGACAATCAATTGGACTAAAGATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTTGATTATGGGCATATGGTGTTGTTTGAATACAAGGGTACTTCTCATTTTGAGGTGCATGTATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGCCACTCAAGATGAACAGGACAATGACAACTCTGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAGTGTCATGTCCTCAACCACATAAGAAACTGAGAACTGACACAAGTGGAGATGTTGAAAGAAGCTCAAAATTGCAAAGCATGCCTGAACATGTCCAAATTAAAGAGGATGTGGGTGCTACCACTGAATGCCTAAAGGTGGAGCAGTTAGTTTGTAAAATTACTGAAGCTTTAAACAGAGCTGCAACCTTCAGTTCTAAAAGTCCCTCTTTCATGGTTGTCATGAAACCTTCCTATTTTCATCAATTTTACTTGCATGTCCCATCACAATTTGTAGGAAAATATTTGAAGAAAAAGCAAAGTGATATCCTCCTTCAGGTCTTGGAGGGGAGAACTTGGTATGCTAGTTATAGTTTCGGCAGAATTAAAGGTGGATGGAAGAAATTTTCATCAGATAACAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGTTGACCAAAAAACGACCCCTTTCTTTCAAAGTTGTAATCTTTAGCATTGGGGAAGAACTACATTCCCCTCCACCACAAGAGGATATGGGTGTTACCACTGAATGCCTAAAAGTGGAGCAGTTAACTTCTGAAATTACTAAAGCTGTAATGGGGGTCACAAACTTCAGATCTAAAAATCCTTCTTTCATGGTTGTCATGAAACCTGCCTATCTTCGTCATTACATGGTGAGCTTTTGA 1146 0.3857 MTCNRRKKRSVPSAANAIRFFKIITTTCLDAAKLKVLYMQKIPNNFTRKYGGDMSNPTFLKPPDGTEWTINWTKDDGDIWFQKGWKEFATYYSLDYGHMVLFEYKGTSHFEVHVFDKSTLEIQYPFHATQDEQDNDNSVEILEELPPSSCNKRKTKLKSPVSCPQPHKKLRTDTSGDVERSSKLQSMPEHVQIKEDVGATTECLKVEQLVCKITEALNRAATFSSKSPSFMVVMKPSYFHQFYLHVPSQFVGKYLKKKQSDILLQVLEGRTWYASYSFGRIKGGWKKFSSDNNLKVGDVCLFELTKKRPLSFKVVIFSIGEELHSPPPQEDMGVTTECLKVEQLTSEITKAVMGVTNFRSKNPSFMVVMKPAYLRHYMVSF. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06273 381 CDD B3_DNA 228 318 IPR003340 GO:0003677
Seca9g06273 381 Pfam B3 DNA binding domain 232 318 IPR003340 GO:0003677
Seca9g06273 381 Pfam B3 DNA binding domain 41 117 IPR003340 GO:0003677
Seca9g06273 381 MobiDBLite consensus disorder prediction 150 185 - -
Seca9g06273 381 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Seca9g06273 381 SMART B3_2 20 118 IPR003340 GO:0003677
Seca9g06273 381 SMART B3_2 230 320 IPR003340 GO:0003677
Seca9g06273 381 PANTHER B3 DOMAIN-CONTAINING 16 312 - -
Seca9g06273 381 SUPERFAMILY DNA-binding pseudobarrel domain 19 118 IPR015300 -
Seca9g06273 381 ProSiteProfiles B3 DNA-binding domain profile. 229 320 IPR003340 GO:0003677
Seca9g06273 381 CDD B3_DNA 19 116 IPR003340 GO:0003677
Seca9g06273 381 SUPERFAMILY DNA-binding pseudobarrel domain 223 318 IPR015300 -
Seca9g06273 381 Gene3D - 212 320 IPR015300 -
Seca9g06273 381 Gene3D - 13 119 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06273 Seca-Chr9 179137846 179139786 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06273 20 339 B3 DNA Binding Superfamily AT3G18990 29.201 4.14e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06273 B3 3.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06273 - - lja:Lj5g3v0508090.1 415.231