Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06272 ATGTTAAGATTGTTTGGCATCTTTTGTTTGAAGCAGAAATATAACTTGTTAGATTTTCTAACTTATAACAAAAAAATCCAGAATGTCCCATCAGAGTTTATAGCAAAATATTTGAAGAAAAAGCCAAGTGATATCCTCCTTCAGGTATTGAACAGGAGAACTTGGCCCGTTCGTTATAAGTTTGGCAAAATTACTACTGGATGGAAGAAATTTGCATCAGGTAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGTTGACTAAAAGCCTACCCCTTTCTTTCAAAGTTTTAATCTTTAGAGTTGGGGAAGAAATACATTCCTCTCCACCACAAGAATCAATTCAAGGCTATGGAGTCAATTGGAGAGACCTTGGGAGAATCCCACACATTGAAAGTAAAACTGTTATTGTCAGTGGAGGTGGTAAGGCAACTCAACGAACTTCACGGCTGATTACTAGTCCCAACTCCTTCACAAATGGAGCTCTTGAAGAAGCTAACAAATTCACCTCGCAAAACCCCTTTTTCACAGTCATTATAGAGCCTGATTTTCATGAGGATTATAGACCGCGTGTACCAAATGCATTCGTCAGAAACTACTTCAATAACAAGCAGCAGATGGTGATGTTACAATACGGAAATAAACTGTGGGATGTGAAGTTGCTCTGTTATCCATATGCAGGGTCAAGCAAGTTTTCTAGAGGTTGGTCTCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGTTTGTGTGTTTGAGCTCATCAAAAGGGAAGATTTTGTGCTTCATGTTCATATTTTCAGAGGCCACTTTTAG 819 0.381 MLRLFGIFCLKQKYNLLDFLTYNKKIQNVPSEFIAKYLKKKPSDILLQVLNRRTWPVRYKFGKITTGWKKFASGNNLKVGDVCLFELTKSLPLSFKVLIFRVGEEIHSSPPQESIQGYGVNWRDLGRIPHIESKTVIVSGGGKATQRTSRLITSPNSFTNGALEEANKFTSQNPFFTVIIEPDFHEDYRPRVPNAFVRNYFNNKQQMVMLQYGNKLWDVKLLCYPYAGSSKFSRGWSLFARESKLLGGDVCVFELIKREDFVLHVHIFRGHF. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06272 272 ProSiteProfiles B3 DNA-binding domain profile. 175 271 IPR003340 GO:0003677
Seca9g06272 272 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 105 IPR044837 -
Seca9g06272 272 SUPERFAMILY DNA-binding pseudobarrel domain 169 269 IPR015300 -
Seca9g06272 272 Pfam B3 DNA binding domain 29 101 IPR003340 GO:0003677
Seca9g06272 272 Pfam B3 DNA binding domain 175 270 IPR003340 GO:0003677
Seca9g06272 272 CDD B3_DNA 29 101 IPR003340 GO:0003677
Seca9g06272 272 SMART B3_2 19 103 IPR003340 GO:0003677
Seca9g06272 272 SMART B3_2 175 271 IPR003340 GO:0003677
Seca9g06272 272 ProSiteProfiles B3 DNA-binding domain profile. 12 103 IPR003340 GO:0003677
Seca9g06272 272 CDD B3_DNA 175 269 IPR003340 GO:0003677
Seca9g06272 272 Gene3D - 10 105 IPR015300 -
Seca9g06272 272 Gene3D - 156 271 IPR015300 -
Seca9g06272 272 SUPERFAMILY DNA-binding pseudobarrel domain 26 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06272 Seca-Chr9 179135739 179137829 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06272 162 269 REM Transcription Factor Family AT1G49480 39.640 3.69e-18 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06272 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06272 - - lja:Lj5g3v0508090.1 257.299