Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06271 ATGACTTGCAACAACAGAAACAACCATTCTGTTTCCTCTCTCATCCGTTTCTTTAAGATTATCACAACAACTACTCTTCAAGCTGCAAAGCTTAAGATTCCAAACGGTTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCTGATGGCACTGAATGGAAAATGTATTGCACTAAACATGACACTGATATTTGGCTTCAAAATGGTTGGAAAGAGTTTGCTACACATTACTCCCTAGATCATGGCCACATGGTGTTGTTTGAATACAAGGATAGTTCTCATTTTGAGAAATTGAGAACTGGCATAGGTGGAGATGTTAGAAGAAGCCCCAAAAAGCAAAACTTGCCTAAACATGTCCAAATTAAAGAGGATATGGGTGGTACCACTGAATGCCTTGGAGTGGAAAAGTTAACTTGTAAAGTTAATGAAGCTTTAAAGAGAGCCACAGCCTTCAGATCTGAAAATCCCTCTGTTATGATTGAAATGAAACCTTCTTATGTTGTATATAACTTGCATGTGCCATCACAATTTGCTGAAAAGTATTTGGGGAAAAAGCAAAGGAATATCCTCCTTCAGATGTTGGATGGGAGAACATGGCCATGTAATTACATTAACAGCCAAATTAGTGCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAATTGGGAGATGTTTGTGTTTTTGAGTTGACCAAACGCCTACCCCTTTCTTTCAAAGTTTCAATCTTTCGAGTTGGGGAAGAACCACATTCCCCTCCACCACAAGAATCAGTTCAAGGAGGTGAAGGTCAATTGGATAGACCCTTGGACTTATTGGAGAATACCGGACATTGA 855 0.3895 MTCNNRNNHSVSSLIRFFKIITTTTLQAAKLKIPNGFTRKYGGDMSNPMYLKPPDGTEWKMYCTKHDTDIWLQNGWKEFATHYSLDHGHMVLFEYKDSSHFEKLRTGIGGDVRRSPKKQNLPKHVQIKEDMGGTTECLGVEKLTCKVNEALKRATAFRSENPSVMIEMKPSYVVYNLHVPSQFAEKYLGKKQRNILLQMLDGRTWPCNYINSQISAGWKKFASDNNLKLGDVCVFELTKRLPLSFKVSIFRVGEEPHSPPPQESVQGGEGQLDRPLDLLENTGH. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06271 284 CDD B3_DNA 162 251 IPR003340 GO:0003677
Seca9g06271 284 ProSiteProfiles B3 DNA-binding domain profile. 162 253 IPR003340 GO:0003677
Seca9g06271 284 CDD B3_DNA 16 101 IPR003340 GO:0003677
Seca9g06271 284 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 256 IPR044837 -
Seca9g06271 284 Gene3D - 144 254 IPR015300 -
Seca9g06271 284 MobiDBLite consensus disorder prediction 254 284 - -
Seca9g06271 284 SUPERFAMILY DNA-binding pseudobarrel domain 157 252 IPR015300 -
Seca9g06271 284 Pfam B3 DNA binding domain 167 251 IPR003340 GO:0003677
Seca9g06271 284 Pfam B3 DNA binding domain 17 101 IPR003340 GO:0003677
Seca9g06271 284 SUPERFAMILY DNA-binding pseudobarrel domain 13 101 IPR015300 -
Seca9g06271 284 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Seca9g06271 284 SMART B3_2 17 111 IPR003340 GO:0003677
Seca9g06271 284 SMART B3_2 164 253 IPR003340 GO:0003677
Seca9g06271 284 Gene3D - 11 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06271 Seca-Chr9 179130203 179131796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06271 136 254 B3 DNA Binding Superfamily AT3G18990 35.938 1.13e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06271 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06271 - - lja:Lj0g3v0253159.1 259.996