Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06270 ATGGAGAGAGCTGAAAAGCCCAATTTCACAACGTCCATGACTTGTAACAGGCGAAAGAAGCGTTCTGTTCCCTCTGCTGCAAATGCAATCCGTTTCTTTAAGATTATTACAACAACAATTCTTGAAGCTGCAAAGATTAAAGTTCTGTGGTCTATGCAGAAGATTCCAAACGGTTTCACTAAGAAATATGGTGGTGATATGTCAAACCCAATGAATCTCAAGCCTCCTGATGGCACTGAATGGAAAATGTATTGGACTAAACATGATTCTGATATTTGGTTTCAAAATGGTTGGAAAGAATTTGCTACAAATTACTCCTTAGATCATGGACACATGGTGTTGTTTGAATACAAAGATAGTTCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCAATTCCATGGTAGCCAAGAAAACCTTGACAAGATCAGTGATGACTCTGTTGAAATTTTGGATGAGCTGCCTCCATCTTCATGCAAGAAGACTAAACTGAAATCACCAATGTCAAGTCCTCAACCAAGTAAGAAATTGAAAACTGGCACAAGTGGAAAAGTTGAAAGAAGCCCCAAATTTCAAAACATGGGTAAACATGTCAAAATTAAAGGTAGTCAGTCTCAAGGGACAAACTTTGAGAATTCAACATTTGCATCTGACAAGGAAGAATTGGATAGTGATGGAGTCAATTGTATAGACCCTGGGAGAATCCCGGACAATGAAGGTAAAACTGTTATTACCTGA 762 0.378 MERAEKPNFTTSMTCNRRKKRSVPSAANAIRFFKIITTTILEAAKIKVLWSMQKIPNGFTKKYGGDMSNPMNLKPPDGTEWKMYWTKHDSDIWFQNGWKEFATNYSLDHGHMVLFEYKDSSHFEVHIFDKSTLEIQYPFQFHGSQENLDKISDDSVEILDELPPSSCKKTKLKSPMSSPQPSKKLKTGTSGKVERSPKFQNMGKHVKIKGSQSQGTNFENSTFASDKEELDSDGVNCIDPGRIPDNEGKTVIT. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06270 253 PANTHER B3 DOMAIN-CONTAINING 28 199 - -
Seca9g06270 253 MobiDBLite consensus disorder prediction 164 253 - -
Seca9g06270 253 SUPERFAMILY DNA-binding pseudobarrel domain 32 131 IPR015300 -
Seca9g06270 253 CDD B3_DNA 31 129 IPR003340 GO:0003677
Seca9g06270 253 MobiDBLite consensus disorder prediction 170 187 - -
Seca9g06270 253 SMART B3_2 32 131 IPR003340 GO:0003677
Seca9g06270 253 Pfam B3 DNA binding domain 54 130 IPR003340 GO:0003677
Seca9g06270 253 MobiDBLite consensus disorder prediction 206 223 - -
Seca9g06270 253 Gene3D - 24 132 IPR015300 -
Seca9g06270 253 ProSiteProfiles B3 DNA-binding domain profile. 55 131 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06270 Seca-Chr9 179121989 179123230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06270 32 137 B3 DNA Binding Superfamily AT3G18990 34.906 2.58e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06270 B3 1.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06270 - - lja:Lj0g3v0187709.1 238.424