Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06269 ATGTGGTGTTCTTGCCATGTCACAGGTGAGATGGCAACTCAACAAAGTGCTCTACACCCCTTCATAAATGGAGCTCTGAAAGAAGCTAGTAAATTCACCTCGGAAAATCCCTTTTTCATAGTCTATGTAAAGCCAGATCAGGGGCACTATTACAGACCGTATGTACCAAATGCTTTCATCACAAAGTACTTCAACAAAAGGAAGCGGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTATCAAGTTGCTCTATTATCCACACGGAGCCAAGTTGTCCGGAGGTTGGTCTCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGCTTGTCTTTTTGAGCTCATCAACAGGGAAGATTATATGCTTGATGTTCATATTTTCAGAGACAATTGA 399 0.4085 MWCSCHVTGEMATQQSALHPFINGALKEASKFTSENPFFIVYVKPDQGHYYRPYVPNAFITKYFNKRKRIVMLQFGKKLWPIKLLYYPHGAKLSGGWSLFARESKLLGGDACLFELINREDYMLDVHIFRDN. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06269 132 Gene3D - 22 132 IPR015300 -
Seca9g06269 132 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 131 IPR044837 -
Seca9g06269 132 Pfam B3 DNA binding domain 38 131 IPR003340 GO:0003677
Seca9g06269 132 SUPERFAMILY DNA-binding pseudobarrel domain 32 130 IPR015300 -
Seca9g06269 132 SMART B3_2 38 132 IPR003340 GO:0003677
Seca9g06269 132 ProSiteProfiles B3 DNA-binding domain profile. 38 132 IPR003340 GO:0003677
Seca9g06269 132 CDD B3_DNA 38 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06269 Seca-Chr9 179121039 179121855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06269 25 132 REM Transcription Factor Family AT1G49480 37.838 1.13e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06269 B3 2.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06269 - - lja:Lj0g3v0187709.1 147.132