Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06266 ATGTCTTCTCAAGGAGTTGATCATCACAGTAATGGCGTCCACTTTTTCAAGGTTATTCTTGAAAGCACCCTTCAAACTGGAGAGCTGAAAGTGCCGGGAAGTTTTGTGAAGAGGCATTGGGAAGGAATAGCAAACCCTGTTTCTCTAAGGCTTCCAAACAGGACTCAATGGAATGTTCATTGGGCAAAGAATGATGGTGATGTTTTGTTTTGCAATGGTTGGAAGGAATTTGCAGAATACTTGTCTTTGAAAGTGTCACAGTTTTTGGTGTTTCAATATAAAGGAAAGTCTCGCTTTAATGTGATTGTATTGGGTATAAACGCATTAGAAATCAATTACCCTGCTGCTAAAGCTACTCATGATGATGATGATAAAGAAGAAGAAGATGAAGAGGTTGATCAGAGTGATTGTTCTTTGAAAATTCTTGATGATAGTTCTCCACTGGAGGGTAAAAGACTAAAATTTTCATCACCATTTTCTCAAAATCCTAAGAAGGTGAAAACCAACCCAAAAGAATATGGAGGTTCTGATAGTGGGTGGTTACCTTATGCAGGTAGTAACAAAGATCTTAAAGAGAGAATCAGAGTATTTCATGAGAAAGTGAAGGAGAAATTCATCATTGAGGATGATCAGACTTTCACATGTGCTATCCACAAAACATACACTGAGAGAGATCTCCTGATCATACCAAGCGATTTTTCTAGAGCACACCTGCAGAACATGGAAGGACGAAATGCTACCTTTTTTGTTGACCAGGACAGAAGTTGGGAAGTGGAGTTTAAGGTCAATCACAGTGGGCAATTAGTATTTGGTAATGGTTGGAGGAAATTTTTGATGGACAACAATTTGAAATGGGGTGATGTATGTGCTTTTCAGCTGGACAAATGCATACAAGTTTCATTCAAAGTTGTTATTTTTTCTTTCGAACAGGACCTAAGCACTCCCCTCTCTAAAGAGCAAGAAAGGCTTTTTCATAGGCGTTCTTCGTTCCTTAAAACTCCCGAAACTCCAAGATCGGACAACAGGTTAATGTCGAAGGAGTTCAACCTCTGCATCAAGTCTTCAATGACCGTAGCGAGCATACCAATTAGCTACATAAGGAATTACAATGCACAAAATGGACAATCTGTGACGTTGCGAGTTGGGGAGAAATCATGGACTGTAATATTGCTATATTATGACTATAATTCCACTGCTAGATTCTCATCAGGTTGGCTTGATTTTGCAAGGGGTTGTGACTTGAAAGAGGGAGATACTTGTATCTTTAAGATGATAGATGAGCATAATTTTGTCTTTGATGTTGCAATTTTAAGAGGCGGCCACTAA 1326 0.3891 MSSQGVDHHSNGVHFFKVILESTLQTGELKVPGSFVKRHWEGIANPVSLRLPNRTQWNVHWAKNDGDVLFCNGWKEFAEYLSLKVSQFLVFQYKGKSRFNVIVLGINALEINYPAAKATHDDDDKEEEDEEVDQSDCSLKILDDSSPLEGKRLKFSSPFSQNPKKVKTNPKEYGGSDSGWLPYAGSNKDLKERIRVFHEKVKEKFIIEDDQTFTCAIHKTYTERDLLIIPSDFSRAHLQNMEGRNATFFVDQDRSWEVEFKVNHSGQLVFGNGWRKFLMDNNLKWGDVCAFQLDKCIQVSFKVVIFSFEQDLSTPLSKEQERLFHRRSSFLKTPETPRSDNRLMSKEFNLCIKSSMTVASIPISYIRNYNAQNGQSVTLRVGEKSWTVILLYYDYNSTARFSSGWLDFARGCDLKEGDTCIFKMIDEHNFVFDVAILRGGH. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06266 441 SUPERFAMILY DNA-binding pseudobarrel domain 352 437 IPR015300 -
Seca9g06266 441 Gene3D - 7 107 IPR015300 -
Seca9g06266 441 Gene3D - 318 439 IPR015300 -
Seca9g06266 441 Gene3D - 192 310 IPR015300 -
Seca9g06266 441 CDD B3_DNA 14 104 IPR003340 GO:0003677
Seca9g06266 441 SMART B3_2 15 107 IPR003340 GO:0003677
Seca9g06266 441 SMART B3_2 351 440 IPR003340 GO:0003677
Seca9g06266 441 SMART B3_2 217 309 IPR003340 GO:0003677
Seca9g06266 441 ProSiteProfiles B3 DNA-binding domain profile. 344 440 IPR003340 GO:0003677
Seca9g06266 441 PANTHER B3 DOMAIN-CONTAINING 214 428 - -
Seca9g06266 441 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Seca9g06266 441 Pfam B3 DNA binding domain 216 303 IPR003340 GO:0003677
Seca9g06266 441 Pfam B3 DNA binding domain 360 437 IPR003340 GO:0003677
Seca9g06266 441 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Seca9g06266 441 ProSiteProfiles B3 DNA-binding domain profile. 212 309 IPR003340 GO:0003677
Seca9g06266 441 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Seca9g06266 441 CDD B3_DNA 360 438 IPR003340 GO:0003677
Seca9g06266 441 CDD B3_DNA 227 307 IPR003340 GO:0003677
Seca9g06266 441 SUPERFAMILY DNA-binding pseudobarrel domain 212 307 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06266 Seca-Chr9 179083299 179086570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06266 358 438 B3 DNA Binding Superfamily AT3G18990 29.630 3.00e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06266 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06266 - - lang:109332968 390.578