Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06265 ATGTATTTCCATCATGACACTAATGCTTTTAATTTCAAGTTCAACAAAGTAATTCAAGATCCGGAACGACAAAAGAAAGAACTCAGGATTCCCCCTGCTGTTGTGATGAAATATTGGAAAGCAATGTCAAATCCAATACATCTCAAACTTCCAAATGGTGCTGGATGGGAAATATCATGGGAAAGTCATGATAGTGGCATTTGGCTTAAGAAAAATTGGAATAAATTTGCACAATCACTATCACTTGGTTATGGATATTTTTTAGTTTTCAAGTATATAGGAGGATCTAATTTTCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTATTCAAGTATAAGATGCATCAATGATGATGAAGGTTCCAACGAACATGATAAACAAGTTTTGGAGCACAATGATTGTGTGGAGATTGTGGATCAATGTGAAAGATCCACACAACCTCTTAAGAAAAAGAAAGCCAACCCAAGTGAAGAATGTAAAAACTACAACAATCCACATTTTGAAGCTAACAATGCTCCATCTAAGAGGATAAGGATTAATGGCAAGAGAAAAATGAATGCAGGGGCTAACAGGGGAGACATAGTTAAAGCCAAGAATTACTCATCAAAAGCTGAAGTTGTTAAAGAGATGATGGCCAAGAATTTTCATTTGGAGAACCCTCTTTTCATACTTATATTGAAGCCAAGTTATGTGCAGAGCAATATATTGGTACTAATTTTACTATATTGTATGGGTTTGTTGAACCAATCAACACATGTTATAAAAATTGTTTAA 783 0.3372 MYFHHDTNAFNFKFNKVIQDPERQKKELRIPPAVVMKYWKAMSNPIHLKLPNGAGWEISWESHDSGIWLKKNWNKFAQSLSLGYGYFLVFKYIGGSNFLVEVFHYNSLEIDYSSIRCINDDEGSNEHDKQVLEHNDCVEIVDQCERSTQPLKKKKANPSEECKNYNNPHFEANNAPSKRIRINGKRKMNAGANRGDIVKAKNYSSKAEVVKEMMAKNFHLENPLFILILKPSYVQSNILVLILLYCMGLLNQSTHVIKIV. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06265 260 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Seca9g06265 260 CDD B3_DNA 28 103 IPR003340 GO:0003677
Seca9g06265 260 PANTHER B3 DOMAIN-CONTAINING 10 193 - -
Seca9g06265 260 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
Seca9g06265 260 Pfam B3 DNA binding domain 20 103 IPR003340 GO:0003677
Seca9g06265 260 MobiDBLite consensus disorder prediction 149 168 - -
Seca9g06265 260 SMART B3_2 14 106 IPR003340 GO:0003677
Seca9g06265 260 Gene3D - 7 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06265 Seca-Chr9 179067105 179068306 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06265 14 259 B3 DNA Binding Superfamily AT3G18990 27.698 3.75e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06265 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06265 - - lja:Lj0g3v0114559.1 198.364