Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06261 ATGCCTTTGTCTGTGAAGTTCAAATTCAATGCTAACAATAACAGATCTTTTATGACCACTGGTTGGACGCAATTTTCCCAGAAATATAATTTACAAGAGGGTGACGTTTGTGTATTTGAGATGATTGACTGCACAAAATTTATGTTCAAAGTCACTATTTTCTGA 165 0.3394 MPLSVKFKFNANNNRSFMTTGWTQFSQKYNLQEGDVCVFEMIDCTKFMFKVTIF. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06261 54 ProSiteProfiles B3 DNA-binding domain profile. 1 54 IPR003340 GO:0003677
Seca9g06261 54 Gene3D - 3 54 IPR015300 -
Seca9g06261 54 CDD B3_DNA 4 54 IPR003340 GO:0003677
Seca9g06261 54 SUPERFAMILY DNA-binding pseudobarrel domain 4 52 IPR015300 -
Seca9g06261 54 Pfam B3 DNA binding domain 5 53 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06261 Seca-Chr9 179041556 179041720 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06261 15 54 B3 DNA Binding Superfamily AT3G18990 47.500 3.14e-08 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06261 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06261 - - fve:101303135 56.6102