Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06260 ATGAAATATTGGAAAGCAATGTCAAATCCAATACTTCTCAAACTTCCAAATGGTGCTGAATGGGAAATATCATGGGAGAGTGATGATAGAGGCATTTGGCTTAAGAAGAATTGGAATAAATTTGCACAGTCTCTATCACTTGGTTATGGATATTTTTTAGTCTTCAAGTATAAAGGAGGATCAAATTTCCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTTTTCAAGTATAAGATGCATCAATGATGGTGAAGGTTCCAATGAACATCATAAACAAATTGAGGAGGAGGATGATTGTGTGGAGATTGTGGATCCATGTGAAAGACCCACACAACCTCTTAAGAAAAAGAAAACCAACTCAAGTGAAGAAGGTAAAAACAACCACAATCTACATTTTGAAACTAACGGTGCTCCATTTCAAAGGACAAGCATTAATGGCAAGAGAAAAATGAATTTGGATTTTGATACTATCCAACAAAAAGTCTCAGGCAAGTCCATTTTTCCTCTTTTTATTTTATGTTTTTGTTTTAATTTTTTTCCTTTTTAG 555 0.3297 MKYWKAMSNPILLKLPNGAEWEISWESDDRGIWLKKNWNKFAQSLSLGYGYFLVFKYKGGSNFLVEVFHYNSLEIDFSSIRCINDGEGSNEHHKQIEEEDDCVEIVDPCERPTQPLKKKKTNSSEEGKNNHNLHFETNGAPFQRTSINGKRKMNLDFDTIQQKVSGKSIFPLFILCFCFNFFPF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06260 184 CDD B3_DNA 8 68 IPR003340 GO:0003677
Seca9g06260 184 Gene3D - 1 72 IPR015300 -
Seca9g06260 184 SUPERFAMILY DNA-binding pseudobarrel domain 5 78 IPR015300 -
Seca9g06260 184 MobiDBLite consensus disorder prediction 113 132 - -
Seca9g06260 184 PANTHER B3 DOMAIN-CONTAINING 5 129 - -
Seca9g06260 184 MobiDBLite consensus disorder prediction 113 139 - -
Seca9g06260 184 Pfam B3 DNA binding domain 10 68 IPR003340 GO:0003677
Seca9g06260 184 ProSiteProfiles B3 DNA-binding domain profile. 1 71 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06260 Seca-Chr9 179026378 179026932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06260 2 116 B3 DNA Binding Superfamily AT3G18990 27.586 4.19e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06260 B3 1.4e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06260 - - lja:Lj0g3v0114559.1 157.147