Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06259 ATGTATATTTTTTACTTGAAACAGATGATACCACGTGAGTTTTGGAGAAAATATTTGAAGTACTTAGAAAAAGAAGTGATTGCAATAATTGAGGTTGATGGGGATGAGAAGAGGTGTAGGCATGGTGTTAGTTTCCAGTTCTGTGATTCTGAAAAACGAATTAGATTCAGCAGTGGTTGGAAGCTATTTATTCACAAATATAACTTACAAGCTAGTGATGGTTGTATATTTGAGATGACTCAACAAGCACCACTTTCATTCAAAGTTACTATTATCAGAGCTAAAGAAACTTTTATGCAACTGAAAGGTCATGGGAATGAAGCAAACAGAGGAAAAAACCAAGATATACAAGAGACAGGGGCAGTGAAAAAATTGGGCAATTCTCATAGTTTTGGAAAAAGAAAAGGCAAAGGCATTAGAGGAATTTTAAGAAGAAGCCTAAAAACAAATGTTACTAAGAATTCTGATGAAAGTCATGATATGAATCAGAATACATTTCAGGTTCATGTAACAAAATATCACCCGTATTGCGTACCAAAATGGTTCATGGAGAGACACAGATGTGATGGAAAATTGGTGAAGCTGAAAGTAGAGGAAACATCGTGGGATGTAAAAGTGATCAACAATCCGAAGATGAGTTTTGGTAGATTCTCTGGAGGTTGGCCTGCATTTGTGAGAGAATGCAAATTGAACATTGGAGACATTTGTAAGTTTGAGATGGTTGATGAGGAAAAGCTTGTGCTCAAAGTTTCAATCACAAAATGTGGCCAACACTTAGGAGTTTAA 786 0.3575 MYIFYLKQMIPREFWRKYLKYLEKEVIAIIEVDGDEKRCRHGVSFQFCDSEKRIRFSSGWKLFIHKYNLQASDGCIFEMTQQAPLSFKVTIIRAKETFMQLKGHGNEANRGKNQDIQETGAVKKLGNSHSFGKRKGKGIRGILRRSLKTNVTKNSDESHDMNQNTFQVHVTKYHPYCVPKWFMERHRCDGKLVKLKVEETSWDVKVINNPKMSFGRFSGGWPAFVRECKLNIGDICKFEMVDEEKLVLKVSITKCGQHLGV. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06259 261 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Seca9g06259 261 CDD B3_DNA 9 93 IPR003340 GO:0003677
Seca9g06259 261 Gene3D - 4 97 IPR015300 -
Seca9g06259 261 Gene3D - 146 256 IPR015300 -
Seca9g06259 261 ProSiteProfiles B3 DNA-binding domain profile. 201 254 IPR003340 GO:0003677
Seca9g06259 261 SUPERFAMILY DNA-binding pseudobarrel domain 169 255 IPR015300 -
Seca9g06259 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 152 254 IPR044837 -
Seca9g06259 261 CDD B3_DNA 166 254 IPR003340 GO:0003677
Seca9g06259 261 SMART B3_2 165 256 IPR003340 GO:0003677
Seca9g06259 261 Pfam B3 DNA binding domain 9 94 IPR003340 GO:0003677
Seca9g06259 261 Pfam B3 DNA binding domain 167 252 IPR003340 GO:0003677
Seca9g06259 261 SUPERFAMILY DNA-binding pseudobarrel domain 9 93 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06259 Seca-Chr9 179024656 179026040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06259 59 251 B3 DNA Binding Superfamily AT5G18000 23.144 1.77e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06259 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06259 - - tpra:123913547 132.109