Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06258 ATGATTCCAAGGAGTTTTGTGAAGAGATATGGGAAAGAATTATCAAGCCCAGTAACCCTTATGCTCCCAAATAGTCCTAAATGGAAAGTTTCATTGATAAAACGTGACCATGATATTCTGTTTCACAAAGGTTGGGAGAGATTTGCCCAACACTACTCTCTGACTTGTGGGAGTTTCTTAGTTTTTAAATATAAAAGAGGATCTTGTTTTCATGTTCAGATATTTGATGTGAGTTCTTTGGAAATAGACTATTGGAACATAAAATCCACAGATGATGATGATGGTGAAAGGACTCACGAAAATTATGAAGACTCTGAAAATAGTGATGAAGATGATGATGACTCTATTGAGATTCTTGATGATAGTGAATCACCCCAACCTCATAAAAGAAGTAAAATTAATGATGATCCATCAAGTAGGAATTGCTCAAAAAATGAAGTTATTGAAAGAAAGAATGAGGCAGTACTACAAGCAGGAAAAGAAAGAGCTTTAGAAAGAGCTAAAAATTTTCACTCTGAGAATCCCTTTTTCATTCGTACATTGTGCCCTTCTTACATTCAAAATACCGTTATACCAACATGGTTTTCAAAACAATATTTGGATGGGTTCAATGGGAATGTAAGCATTGCGGTTGATGAGGACATGCCTTTGTCTGTGAAGTTCAAATTCAATGCTAATAATAACAGAGCTTTTATGACCACTGGTTGGACGCAATTTTCCCAGAAATATAATTTACAAGAGGGTGACGTTTGTGTATTTGAGATGATTGACTGCACAAAATTTACGTTCAAAGTCACTATTTACCGAGCCAGAGAACAACCAAACTCTGACCAGTTTCAAGGTTAA 846 0.3546 MIPRSFVKRYGKELSSPVTLMLPNSPKWKVSLIKRDHDILFHKGWERFAQHYSLTCGSFLVFKYKRGSCFHVQIFDVSSLEIDYWNIKSTDDDDGERTHENYEDSENSDEDDDDSIEILDDSESPQPHKRSKINDDPSSRNCSKNEVIERKNEAVLQAGKERALERAKNFHSENPFFIRTLCPSYIQNTVIPTWFSKQYLDGFNGNVSIAVDEDMPLSVKFKFNANNNRAFMTTGWTQFSQKYNLQEGDVCVFEMIDCTKFTFKVTIYRAREQPNSDQFQG. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06258 281 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Seca9g06258 281 MobiDBLite consensus disorder prediction 121 144 - -
Seca9g06258 281 Pfam B3 DNA binding domain 188 270 IPR003340 GO:0003677
Seca9g06258 281 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
Seca9g06258 281 Gene3D - 1 79 IPR015300 -
Seca9g06258 281 SMART B3_2 177 271 IPR003340 GO:0003677
Seca9g06258 281 SMART B3_2 1 78 IPR003340 GO:0003677
Seca9g06258 281 SUPERFAMILY DNA-binding pseudobarrel domain 171 272 IPR015300 -
Seca9g06258 281 Gene3D - 154 273 IPR015300 -
Seca9g06258 281 PANTHER B3 DOMAIN-CONTAINING 1 263 - -
Seca9g06258 281 MobiDBLite consensus disorder prediction 92 144 - -
Seca9g06258 281 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
Seca9g06258 281 MobiDBLite consensus disorder prediction 105 120 - -
Seca9g06258 281 CDD B3_DNA 175 269 IPR003340 GO:0003677
Seca9g06258 281 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Seca9g06258 281 CDD B3_DNA 1 76 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06258 Seca-Chr9 178979246 178981545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06258 2 270 B3 DNA Binding Superfamily AT3G18990 30.960 1.11e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06258 B3 5.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06258 - - tpra:123913572 241.891