Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06250 ATGACTTGTAACAGTAGCAAGAAGCATTCTCTTCCCTCTGTAATCCGTTTCTTTAAGATTATCACAAAAACATGTCTTGAACCTCAAAAGCTTAAGATTCCAAACAATTTCACTATGAAATATGGTGGTGATATGTCAAACCCAATACTTCTCAAGCCTCCAGATGGCACTGAATGGAAATTGAATTGGACTAAACATGATGGTGATATTTGGCTTCAAGAGGGTTGGGAAGAATTTGCTACACATTACTCCCTTGATTACGGACATATGGTGTTGTTTGAATACAAGGATACTTCTAATTTTGGGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCACTCAAGATGAACAGGACAACATTGACCAGATTAGTAATGAATCAGTTGAACTTTTGGATAATCTACCTCCCCCTACATGCAAGAAGACTACCTCCAAGTCATGTCCTCAACCACATAAGAAATTGAGGACTGCCACCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTCAACATGCCAATATAAAAGAGGATGTGAGTGGTACCACTCAATGCCAAAAAGTGGAGCAGTTAATTTTTAAAATTACTAGAGCTTTAAACAGAGCTGAAACCTTCAGATCTAAAAATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGGTCGTGGAAACTTGAGTATCTCATCACAATTTGCAGAAAAATATTTGAAGGAAAATCAAAGGGATATCCTCCTTCAGGTCTTGGATGGGAGAACTTGGCATGGTAGATATATTTTCAGAAAAGTTGGTAAATATAATAATATGCAAATTACTTCTGGATGGAGGAAATTTGCATCAGATAATAATTTGAAAGAGGGGGATGTTTGTCTTTTTGAGTTGATCAAAAAACGACCCCTTTCTTTCAAAGTTTTAATCTTTCGAGTTGGGGAAGAACCACATTCCCTTCCCCCACAAGAATCAGTTGAAGAACCACATTCCCCTTCACCACAAGGTGAGGCAACTCAACGAACTTCACTGCACCCCATCACAGGTGGAGCTCTGATAGAAGCTAATAAATTCACCTCAGAGAATCCCTTTTTCAAAGTCTATATAAAGCCAAGTTCTACAAAGATATACAGACCGAAGAATACCTTGATGTTACAAATTGGAAAGAAATTGTGGCCTGTAAGAGTGCTCCGTTATCCATATGAAGGTTCAAGCAAGTTGTCTGGAGGTTGGACCCGATTTGCTAGAGAAAATAAATTGTTAGATGGAGATGTTTGTGTCTTTGAGCTCATCAACAACAGGAAAGATGCTGTGTTTGATGTTCATATTTTCAGAGGACACTGTTAG 1365 0.3832 MTCNSSKKHSLPSVIRFFKIITKTCLEPQKLKIPNNFTMKYGGDMSNPILLKPPDGTEWKLNWTKHDGDIWLQEGWEEFATHYSLDYGHMVLFEYKDTSNFGVHIFDKTTLEIQYPFHATQDEQDNIDQISNESVELLDNLPPPTCKKTTSKSCPQPHKKLRTATTSGGVGSSPKLQNSPQHANIKEDVSGTTQCQKVEQLIFKITRALNRAETFRSKNPSFIVVMKPSYVGRGNLSISSQFAEKYLKENQRDILLQVLDGRTWHGRYIFRKVGKYNNMQITSGWRKFASDNNLKEGDVCLFELIKKRPLSFKVLIFRVGEEPHSLPPQESVEEPHSPSPQGEATQRTSLHPITGGALIEANKFTSENPFFKVYIKPSSTKIYRPKNTLMLQIGKKLWPVRVLRYPYEGSSKLSGGWTRFARENKLLDGDVCVFELINNRKDAVFDVHIFRGHC. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06250 454 Pfam B3 DNA binding domain 17 108 IPR003340 GO:0003677
Seca9g06250 454 Pfam B3 DNA binding domain 222 318 IPR003340 GO:0003677
Seca9g06250 454 Pfam B3 DNA binding domain 384 451 IPR003340 GO:0003677
Seca9g06250 454 CDD B3_DNA 370 451 IPR003340 GO:0003677
Seca9g06250 454 Gene3D - 13 110 IPR015300 -
Seca9g06250 454 SMART B3_2 222 320 IPR003340 GO:0003677
Seca9g06250 454 SMART B3_2 17 109 IPR003340 GO:0003677
Seca9g06250 454 SMART B3_2 370 453 IPR003340 GO:0003677
Seca9g06250 454 CDD B3_DNA 16 107 IPR003340 GO:0003677
Seca9g06250 454 MobiDBLite consensus disorder prediction 140 182 - -
Seca9g06250 454 MobiDBLite consensus disorder prediction 324 348 - -
Seca9g06250 454 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Seca9g06250 454 SUPERFAMILY DNA-binding pseudobarrel domain 364 452 IPR015300 -
Seca9g06250 454 Gene3D - 204 321 IPR015300 -
Seca9g06250 454 Gene3D - 355 453 IPR015300 -
Seca9g06250 454 CDD B3_DNA 220 318 IPR003340 GO:0003677
Seca9g06250 454 PANTHER B3 DOMAIN-CONTAINING 312 447 - -
Seca9g06250 454 SUPERFAMILY DNA-binding pseudobarrel domain 217 319 IPR015300 -
Seca9g06250 454 ProSiteProfiles B3 DNA-binding domain profile. 221 320 IPR003340 GO:0003677
Seca9g06250 454 SUPERFAMILY DNA-binding pseudobarrel domain 12 108 IPR015300 -
Seca9g06250 454 ProSiteProfiles B3 DNA-binding domain profile. 398 453 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06250 Seca-Chr9 178873550 178876577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06250 321 451 B3 DNA Binding Superfamily AT3G18990 34.694 2.42e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06250 B3 5.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06250 - - lja:Lj5g3v0508090.1 471.47