Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06249 ATGACTAGCAAGAAGCATTCTGTTCCCTCTGTGATCCGTTTCTTTAAGATCATCACAACAACATGTCTTGAAGCTCAAAAGCTTAAAGTTCTATATATGCAGAAGATTCCAAACAATTTAACTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAGCCTCCTGATGGCACTGAATGGGAAATATATTTGACTAAAGATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTTGATTTCGGGCATATGGTGTTGTTTGAATACAAGGGTACTTCTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGGCAACCAAGATGAACAGGACAAGATTAGTGACAGCTCAGTTGAAATTTTGGAAGAACTACCTCCATCTTCTTGCAACAAGAGGAAGACTAAACTGAAATCACCAATGTCATGTCCTCAACCATGTCAGAAATTGAGAACTGGCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTGCAAAATTTACCTGAACATGTCCAAATTAAAGATGAAGTGGGTGGTAGTGGTACCACTACCACTGAAAGCCAAAAGTTGGAGCAGTTAAATCTTAAAATTACTGAAGCTATAAACAGAGCCAGAGCCAGAGCCACAACCTTCGGATCTAAATATCCTTCTTTCATTGTTGTCATGAAACCTTCTTATATTCGACATGGGTTGCATGTCCCATTACAATATGGAGAAAAATATTTGAAGACAAAAAGAAAATTGGATATCCTCCTTCAGGTGTTGGATGGGAGAACTTGGCCATGTAAATATATGCACAACATAATTAGTGCTGGATGGAGAAAGTTTGTATCAGATAATAATTTGAAATTGGGGGATGTTTGTCTTTTTGAGTTGATCAATAGCCAACCCCTTTCTCTCAAAGTTTCAATCTTTCGAGTTGGGGAAGAACCACATTCCCCTCTACCACAAGGTGACAAGGCAGATGGAGCTATGAAAGAAGCTAATAAATTCACCTCTGAGAATCCCTTTTTCACAGTCAATATAAAGCCTTATTCTGGGAGGGTACACAGACCGAGTGTACCAAGAACCTTTGTCAATAATAAGAAGACCTTCATGTTACAATTTGAAAAGAAGTTGTGGCCTGTAAAGGTGCTCTGTTATCCATGTAAAGGTTCAAGGGTGTTATCTAGAGGTTGGGCCACATTTATGAGAGAAAATAAATTACTAGGTGGAGGTGTTTTTGTCTTTGAGCTTATCAACAGGGAACATGCTGTGTTTGATGTTCATATTTTAAGAGGCCACAGTTAG 1338 0.3849 MTSKKHSVPSVIRFFKIITTTCLEAQKLKVLYMQKIPNNLTRKYGGDMSNPMFLKPPDGTEWEIYLTKDDGDIWFQKGWKEFATYYSLDFGHMVLFEYKGTSHFEVHIFDKTTLEIQYPFHGNQDEQDKISDSSVEILEELPPSSCNKRKTKLKSPMSCPQPCQKLRTGTSGGVGSSPKLQNLPEHVQIKDEVGGSGTTTTESQKLEQLNLKITEAINRARARATTFGSKYPSFIVVMKPSYIRHGLHVPLQYGEKYLKTKRKLDILLQVLDGRTWPCKYMHNIISAGWRKFVSDNNLKLGDVCLFELINSQPLSLKVSIFRVGEEPHSPLPQGDKADGAMKEANKFTSENPFFTVNIKPYSGRVHRPSVPRTFVNNKKTFMLQFEKKLWPVKVLCYPCKGSRVLSRGWATFMRENKLLGGGVFVFELINREHAVFDVHILRGHS. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06249 445 CDD B3_DNA 232 322 IPR003340 GO:0003677
Seca9g06249 445 SMART B3_2 234 324 IPR003340 GO:0003677
Seca9g06249 445 SMART B3_2 14 112 IPR003340 GO:0003677
Seca9g06249 445 SMART B3_2 353 444 IPR003340 GO:0003677
Seca9g06249 445 Gene3D - 334 444 IPR015300 -
Seca9g06249 445 Gene3D - 213 325 IPR015300 -
Seca9g06249 445 CDD B3_DNA 352 442 IPR003340 GO:0003677
Seca9g06249 445 ProSiteProfiles B3 DNA-binding domain profile. 232 324 IPR003340 GO:0003677
Seca9g06249 445 SUPERFAMILY DNA-binding pseudobarrel domain 10 111 IPR015300 -
Seca9g06249 445 ProSiteProfiles B3 DNA-binding domain profile. 353 444 IPR003340 GO:0003677
Seca9g06249 445 SUPERFAMILY DNA-binding pseudobarrel domain 227 323 IPR015300 -
Seca9g06249 445 PANTHER B3 DOMAIN-CONTAINING 345 441 - -
Seca9g06249 445 SUPERFAMILY DNA-binding pseudobarrel domain 347 442 IPR015300 -
Seca9g06249 445 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Seca9g06249 445 CDD B3_DNA 13 110 IPR003340 GO:0003677
Seca9g06249 445 Pfam B3 DNA binding domain 353 442 IPR003340 GO:0003677
Seca9g06249 445 Pfam B3 DNA binding domain 236 322 IPR003340 GO:0003677
Seca9g06249 445 Pfam B3 DNA binding domain 35 111 IPR003340 GO:0003677
Seca9g06249 445 Gene3D - 9 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06249 Seca-Chr9 178856228 178862033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06249 334 442 B3 DNA Binding Superfamily AT3G18990 32.174 7.71e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06249 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06249 - - lja:Lj5g3v0508090.1 472.241