Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06241 ATGATGAGGAGATACCAGAGGAGGAAGTTGAATTTGGAGTTGGACCTGAACCAAACTCCGCCAGCGGAGGAACCTTCTGCTCCCCAACAGCTGCAGCAGCCAATTACGATTGACGTGGAGGCCATTGATGATGATGTTATTGAATCCTCACCCAGGGCTTTTGCTCAGGCTAAGACCAATGCGAGGAGGAATCGGAGGAGGACTATAGTTGACGTGGATTCGGAAAATCAGACCAGGGCAACTAATAATGATCACAGAGGATGCGGAAGAGATCGCTCAATCCAACGAATTATTAACAGTGATCTTTATATCAATTTGGAAGGCAGTAGCAGTTCTTTGAATAAGAATGCTAGAAAATCACCTGAACGTCCTGAACCTCCAAAGGAGCCTGTCTTTAACTGCCCAATATGTATGGCTCCTTTGACAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAGGAAGTGCATTAGAACTGCTATAAATACACAGGGTAAATGCCCTACTTGTAGGAAAAAGGTTACTATGAGAGAGCTGATAAGGGTGTTTCTTCCATCAGCTAGTTGA 570 0.4421 MMRRYQRRKLNLELDLNQTPPAEEPSAPQQLQQPITIDVEAIDDDVIESSPRAFAQAKTNARRNRRRTIVDVDSENQTRATNNDHRGCGRDRSIQRIINSDLYINLEGSSSSLNKNARKSPERPEPPKEPVFNCPICMAPLTEEMSTRCGHIFCRKCIRTAINTQGKCPTCRKKVTMRELIRVFLPSAS. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06241 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 187 IPR013083 -
Seca9g06241 189 PANTHER ELFLESS, ISOFORM B 3 187 - -
Seca9g06241 189 ProSiteProfiles Zinc finger RING-type profile. 134 172 IPR001841 -
Seca9g06241 189 SMART ring_2 134 171 IPR001841 -
Seca9g06241 189 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Seca9g06241 189 SUPERFAMILY RING/U-box 133 178 - -
Seca9g06241 189 Pfam Zinc finger, C3HC4 type (RING finger) 133 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06241 Seca-Chr9 178673286 178677036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06241 8 187 C3H Transcription Factor Family AT5G48655 48.223 3.44e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06241 K22651 - cave:132188663 212.616