Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06235 ATGTCTAACTTGGTTCAACTTCCCTCCAATCTTTTGCCATCTGATGCAAGCCCTGAATGGATGAACAAAGCTGACAATGCATGGCAACTCACAGCTGCTACACTTGTTGGCCTTCAAAGTGTTCCTGGTCTCATAATCTTGTATGGTGGAGCTGTTAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTTTGCTTGTGTCTTTTTTTGTTGGGTTATTTGGGGTTATAGGATGTCTTTTGGTGATAAGCTTTTCCCTTTCTGGGGAAAACCTGCTGTTGCATTAGATGAGGTTTACCTTTTCAAGCCAGCTTTTTTGGGGGCTTTCCCAAATGCCACAATGGTGTATTTCCAGTGTGTCTTTGCTGCCATTACTTTGATTTTGATAGCAGGGGCTCTGTTGGGTCGCATGAACTTTTATGCTTGGATGTTGTTTGTGCCTTTATGGCTTACCTTCTCCTACACCTTCACAGCATTCAGCATATGGAGTACCAATGGCTTTCTGTCCAAAATGGGCATAATCGATTATTCAGGTGGTTATGTCATCCATTTGTCTTCTGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGACCACGCCTAAACAAGGACAGGGAAAGGTTCCCTCCAAACAACATACTTCTGATGCTAGCTGGAGCAGGGCTGCTATGGATGGGGTGGACAGGGTTCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCCTTGGCTGTCTTGAACACTCATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATGTCATATTTTTCCGAAAGCCTTCTGTGATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATAACCCCAGCTGCAGGGGTTGTGCAAGGATGGGCAGCACTTATAATGGGAGTTTTTTCAGGCTCAATTCCTTGGTTCACTATGATGGTAATCCATAAGAGATCAAAGCTGCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACACATGCCATTGCAGGAAGCCTTGGAGGAATCCTCACAGGGCTCTTTGCTGAGCCAAGACTGAACTACTTGTTCTATGGCAATTATAATAAATACGTTGGTCTATTTTATGGCTTCCAATCGAACTTGGTCAAAAATGGGGTCAGGCAAATACTAATCCAACTTCTTGGGATTTTGTTTGTTGTCTTTGTTAATGTCATAAGCACAAGTTTGATATGCCTCTTGATTCGATTTGTGGTTCCTTTAAGAATGTCTGAAGAGGATATGGAAATAGGTGATGAAGCTGCTCATGGAGAAGAAGCTTATGCCATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCTAAATATGGAAGTTCATTATATGATGATGTTGAAGCAGGGGCCACCAAGAACAAGCGTGGTGGCCAGCTTGAGATGATGTAG 1446 0.4398 MSNLVQLPSNLLPSDASPEWMNKADNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGDKLFPFWGKPAVALDEVYLFKPAFLGAFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSMDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPRLNYLFYGNYNKYVGLFYGFQSNLVKNGVRQILIQLLGILFVVFVNVISTSLICLLIRFVVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGATKNKRGGQLEMM. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06235 481 SUPERFAMILY Ammonium transporter 20 423 - -
Seca9g06235 481 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005886
Seca9g06235 481 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005886
Seca9g06235 481 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005886
Seca9g06235 481 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca9g06235 481 NCBIfam ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca9g06235 481 Gene3D Ammonium transporter AmtB like domains 10 445 IPR029020 -
Seca9g06235 481 FunFam Ammonium transporter 10 444 - -
Seca9g06235 481 PANTHER AMMONIUM TRANSPORTER MEP2 9 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca9g06235 481 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06235 Seca-Chr9 178611596 178614323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06235 116 477 Inorganic Solute Cotransporters AT2G38290 61.326 1.86e-145 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06235 K03320 - gmx:100787856 856.67