Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06232 ATGAGTTCCAATTCTAAACAAATTGATGAGCTTCCCACAGAGGTAGCAAAGGTGGACGATGCTTACATCTCTGCTTTGTTGCTATGTTTTAGCCGCATCTTCCCTGCAATCTTAAACACTGCTATTGATCTCAATTTGTTTGAGATCATAGCAAAGGCAAAAAGTGGTTCAAGCTTGTCTGCCTCTGAGATTGCTTCTCAACTTCCAAATCAACACCCAGAATTGGCTAATAGGCTTCAACGCATATTGCCTATACTAGCCAGTTATTCTCTTCTAGATTGTTCCATTCGCATCAATGAAGATGGTATCAGAGAAAGAGTCTATGCTCTCACACCCATTGGTCAATACTTTGCTTGTGATGCCAATGGAGGTTCTTTGGGTCCACTCTCACGTTTAATGCATCGAGGATATTCTGACGTTTGGAACGACGTAAAGGATGCAATTATGGATCCTAATAATAAAAACCATTTCCAAAATATACATGGAATGGCTATTTATCAGTATACAGAGAAAGATAAAGAAATGAATCACATGGTGAACAAAGCAATGGCCCATGCCGGCCCATTAGAAATGAAAAGAATCCTTGAACTGTATAAAGGATTTGAGGAAGTGTCAACACTCGTTGAAGTTGGAGGTGGAGAAGGGAGAGCATTACAACAGATTATATCTAAGTATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAACATGCATCACCTCTTCCAGGGATAGAGCATGTTCCAGGAGATATGTTTGAAAGTGTTCCACAGGGTGATGCCATTTTACTAAAGCTTGTATGTCATAATTGGTCAGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTTACAAATCTTTGCCAAAACATGGAAAGGTTATTGTTCTGGACTACATAATGCCGGAAATTCCAAATCCGAGCAATATCTCTAAGCATACCTGTGTTATTGACACTCTAATGTTCCTAGTAAATGGTGGTGGAAAGGAAAGATCTGAGAGAGAGTTTCAGAGCTTGTGCATGAGCTCTGGATTTTCCAAATTTCATGTTGCTTGCAGTGATTTCTCTGCCATGTCAGGGGTGATGGAATTTTATAAATAA 1107 0.3875 MSSNSKQIDELPTEVAKVDDAYISALLLCFSRIFPAILNTAIDLNLFEIIAKAKSGSSLSASEIASQLPNQHPELANRLQRILPILASYSLLDCSIRINEDGIRERVYALTPIGQYFACDANGGSLGPLSRLMHRGYSDVWNDVKDAIMDPNNKNHFQNIHGMAIYQYTEKDKEMNHMVNKAMAHAGPLEMKRILELYKGFEEVSTLVEVGGGEGRALQQIISKYPSIKGINFDLPQVIQHASPLPGIEHVPGDMFESVPQGDAILLKLVCHNWSDEECVKFLRNCYKSLPKHGKVIVLDYIMPEIPNPSNISKHTCVIDTLMFLVNGGGKERSEREFQSLCMSSGFSKFHVACSDFSAMSGVMEFYK. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06232 368 CDD AdoMet_MTases 206 303 - -
Seca9g06232 368 Gene3D Vaccinia Virus protein VP39 120 368 IPR029063 -
Seca9g06232 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 358 IPR029063 -
Seca9g06232 368 FunFam Uncharacterized protein 118 368 - -
Seca9g06232 368 Gene3D - 3 117 IPR036388 -
Seca9g06232 368 PIRSF O-mtase 4 368 IPR016461 GO:0008168
Seca9g06232 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 368 IPR016461 GO:0008168
Seca9g06232 368 FunFam Caffeic acid 3-O-methyltransferase 2 117 - -
Seca9g06232 368 Pfam Dimerisation domain 37 87 IPR012967 GO:0046983
Seca9g06232 368 PANTHER O-METHYLTRANSFERASE 31 357 IPR016461 GO:0008168
Seca9g06232 368 Pfam O-methyltransferase domain 141 348 IPR001077 GO:0008171
Seca9g06232 368 SUPERFAMILY "Winged helix" DNA-binding domain 19 120 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06232 Seca-Chr9 178571163 178573707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06232 12 357 Monolignol Biosynthesis Gene Families AT5G54160 45.977 7.17e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06232 - - aprc:113869089 536.954