Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06229 ATGAGTTCCAATAATTCTAAACAAAATGAGGTTGCAAAGGTTGATGATGCTTACCTCTCTGCTTTGTTGCTATCTTTTAGCCGTGTCTTTCCTGCAATCCTAAATGCTGCTATTGATCTCAATATTTTTGATATCATAGCTAAGTCATGTGATGAATATTCAAGCTTATCTGCCTCTGAGATAGCTTCCCAACTTCCAAATCAACACCGAGAATTGGCCACTAGGCTTGAGCGCATATTGACTGTGCTAGCCAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAATGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCCATTGGTCAATACTTTGCATGTGATAAAGATGGAGGCTCTTTGGCTCCACTCTCAACTTTAGTGCATCGAGGATATCATAACATTTGTTTCTTTATTAGGGATGATGTAAAAGATGCAATTGTGGACCTTAATAACAATAACCATTTCCAAAAAGTCTATGGAATGCCGGCTTATCAATATATGGAGAAAGATAAAGAGCTAAATAACATTTTTAATAAAGCAATGGCTCAATCCGGTCCATTAGAGATGAAAAGGATCCTTAAATTATACAAAGGATTTGAGGGAGTCTCAACATTGGTTGATGTAGGAGGTGGAATAGGGCAGGCCTTAAAATTGATTCTTTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAACATGCACCTCCTCATCCAGGGATAGAGCATGTAGGAGGAGACATGTTTGAAAGCGTTCCAAAGGGTGATGCCATTTTACTAAAGCTTGTATGTCATAATTGGTCAGATGAAGAGTGTGTGAAGTTTTTAAAAAATTGCCACAAGGCTTTGCCACAAGATGGGAAGGTGATTGTTCTGGACTATATAATTCCAGAAGTCCCCAATTCAAGCGGAATATCTAAGCATACTTGTATTATTGACAATCTCATGTTTTTAGCAGCTAATGGAAAGGAGAGAACTGAGAAAGAATTTGAGAGCTTATGCAACAGCTCTGGATTTTCTAGATTTCATATTGCATGTAGTGATTTCTCAGTTATGTCTGGAGTAATGGAATTTTATAAATAA 1107 0.3722 MSSNNSKQNEVAKVDDAYLSALLLSFSRVFPAILNAAIDLNIFDIIAKSCDEYSSLSASEIASQLPNQHRELATRLERILTVLASYSLLTCSIRTNEDGKRERVYALSPIGQYFACDKDGGSLAPLSTLVHRGYHNICFFIRDDVKDAIVDLNNNNHFQKVYGMPAYQYMEKDKELNNIFNKAMAQSGPLEMKRILKLYKGFEGVSTLVDVGGGIGQALKLILSEYPSIKGINFDLPQVIQHAPPHPGIEHVGGDMFESVPKGDAILLKLVCHNWSDEECVKFLKNCHKALPQDGKVIVLDYIIPEVPNSSGISKHTCIIDNLMFLAANGKERTEKEFESLCNSSGFSRFHIACSDFSVMSGVMEFYK. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06229 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 365 IPR029063 -
Seca9g06229 368 CDD AdoMet_MTases 207 304 - -
Seca9g06229 368 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
Seca9g06229 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 368 IPR016461 GO:0008168
Seca9g06229 368 Gene3D Vaccinia Virus protein VP39 177 355 IPR029063 -
Seca9g06229 368 Gene3D - 29 195 IPR036388 -
Seca9g06229 368 Pfam O-methyltransferase domain 144 348 IPR001077 GO:0008171
Seca9g06229 368 PIRSF O-mtase 1 368 IPR016461 GO:0008168
Seca9g06229 368 FunFam Caffeic acid 3-O-methyltransferase 1 114 - -
Seca9g06229 368 Pfam Dimerisation domain 33 84 IPR012967 GO:0046983
Seca9g06229 368 PANTHER O-METHYLTRANSFERASE 24 357 IPR016461 GO:0008168
Seca9g06229 368 FunFam Uncharacterized protein 115 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06229 Seca-Chr9 178487510 178489390 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06229 15 359 Monolignol Biosynthesis Gene Families AT5G54160 49.292 1.60e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06229 - - gmx:100793053 544.658