Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06227 ATGAGTTCCAATTCCAAACAAAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGAAGCTTACCTCACTGCTCTGTTTCTAAGCTTTAGCAGGGTATTTCCTGCAATTCTGAATGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGCTAAGGCACAAAGTTCATGTGGTTCTTCATCCTTGTCTGCCTCTGAAATTGCTTCTCAGTTTCCAAACCAACACTCAGAATTGGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTGACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATGCATTTGACAATGATGGAAACTCTTTGGGTCCATTCTCAACTTTAATCCATAGAGGATTTCAACAAGTTTGGAATGATGTCAAGGATGCAATTGCTGACCCTGATAACAATAACCATTTCCAAAATGTCCATGGATTGCTGCCTTTTCAATATACGGAGAAAGATAAAGAGCTGAATCAAATATTTAACAATGCAATGGCTCATAATGGGCCATTAGAAATGAAAATGATCCTTAAACTATATAAAGGATTTGAGGGAGTATCAACACTCGTTGATGTAGGAGGTGGAGTAGGCCGGGTACTAAAACAAATTATCTCTAAATATCCTTCTATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAACATGCATCACCTCTTCCAGGGATTGAGCACGTTGGAGGAAGCATGTTTGAAAGTGTTCCAGAGGGTGATGCCATCTTACTAAAGCGAGTATGTCATAATTGGTCAGATGAAGAATGTGTGAAGTTTCTAAGAAATTGTCACAAAGCTTTGCCAAAATATGGGAAGGTGATTGTTGTGGACTGTATAGTTCCAGAAATTCCAAACCCAAGCATTAGCTCTAAGCTTGCTTGTGATGTTGACAATGTCATGTTTTTAATACACGGAGGAAAGGAAAGGACTGAGAATGAATTTCAAAGCTTATGCATGAGCTCTGGATTTTCCAAATTTCATGTTGCTTGCAGGGGTTTCTCAGCTATATTAGGAGTGATGAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGAAGCTTACCTCACTGCTCTGTTTCTAAGCTTTAGCAGGGTATTTCCTTCAATTCTGAATGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGCTAAGGCACAAAGTTCATGTGGTTCTTCATCCTTGTCTGCCTCTGAAATTGCTTCTCAGTTTCCAAACCAACACTCAGAATTGGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAGTGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATGTGTGTGACAATGACAGTGAATCTTTGGGCCCATTCTCATCTTTAGTGCATCGAGGATTTCATCAAGTTTGGAATGATGTAAAGGATGCATTTGTGGACCCTAATAGCATTAACCTTTTTCAGAAAGTTCATGGAGTACCTCTATTTCAATTTATGGAGCAAGATCAAGAGCTTAATCATATGTTTAACAAAGCAATGGCCCAAGCCAGCCCGTTAGAAGTGAAAATGATCCTTAAACAATATAAAGGATTTGAGGGATTATCAACACTGGTTGATGTAGGAGGTGGAGTAGGGCTATCCTTAAAATTGATTATTTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAAGATGCACCACCTCACCCAGGGATTGAGCACGTTGGAGGAAGCATGTTTGAAAGTGTTCCGAATGGTGATGCCATCTTAATAAAACGTGTTTGTCATAATTGGTCCGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTCACAAAGCTCTGCCAAAATATGGAAAGGTGATTCTTGTGGACTCTATAGCTCCGGAAGTTCCAGACTCAAGCACTATCTCTAAGCTTGCTAGTGTAATTGACAATTCCATGTTTTTAGTGCTTGGTGGAAAGTTAAGAACTGAAAAAGAATTTCAAACCTTATGTAGCAGCTCTGGATTTTCCAAATTCCATGTTGCTTGTAGAGGTTTATTAGCCATGTTAGGAGTGATGGAATTTTATAAATAA 2190 0.3868 MSSNSKQNQLPIDQETEVDEAYLTALFLSFSRVFPAILNAAVDLNLFEIIAKAQSSCGSSSLSASEIASQFPNQHSELAKRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPVGQYYAFDNDGNSLGPFSTLIHRGFQQVWNDVKDAIADPDNNNHFQNVHGLLPFQYTEKDKELNQIFNNAMAHNGPLEMKMILKLYKGFEGVSTLVDVGGGVGRVLKQIISKYPSIKGINFDLPQVIQHASPLPGIEHVGGSMFESVPEGDAILLKRVCHNWSDEECVKFLRNCHKALPKYGKVIVVDCIVPEIPNPSISSKLACDVDNVMFLIHGGKERTENEFQSLCMSSGFSKFHVACRGFSAILGVMNQLPIDQETEVDEAYLTALFLSFSRVFPSILNAAVDLNLFEIIAKAQSSCGSSSLSASEIASQFPNQHSELAKRLERMLPVLASYSLLTCSIRTSEDGKRERVYALSPVGQYYVCDNDSESLGPFSSLVHRGFHQVWNDVKDAFVDPNSINLFQKVHGVPLFQFMEQDQELNHMFNKAMAQASPLEVKMILKQYKGFEGLSTLVDVGGGVGLSLKLIISEYPSIKGINFDLPQVIQDAPPHPGIEHVGGSMFESVPNGDAILIKRVCHNWSDEECVKFLRNCHKALPKYGKVILVDSIAPEVPDSSTISKLASVIDNSMFLVLGGKLRTEKEFQTLCSSSGFSKFHVACRGLLAMLGVMEFYK. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06227 729 Gene3D Vaccinia Virus protein VP39 179 357 IPR029063 -
Seca9g06227 729 FunFam Caffeic acid 3-O-methyltransferase 365 479 - -
Seca9g06227 729 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 385 729 IPR016461 GO:0008168
Seca9g06227 729 Gene3D - 365 479 IPR036388 -
Seca9g06227 729 FunFam Uncharacterized protein 122 369 - -
Seca9g06227 729 SUPERFAMILY "Winged helix" DNA-binding domain 17 124 IPR036390 -
Seca9g06227 729 PANTHER O-METHYLTRANSFERASE 29 352 IPR016461 GO:0008168
Seca9g06227 729 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 370 IPR016461 GO:0008168
Seca9g06227 729 Pfam Dimerisation domain 396 449 IPR012967 GO:0046983
Seca9g06227 729 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Seca9g06227 729 Gene3D - 33 197 IPR036388 -
Seca9g06227 729 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
Seca9g06227 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 496 715 IPR029063 -
Seca9g06227 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 356 IPR029063 -
Seca9g06227 729 SUPERFAMILY "Winged helix" DNA-binding domain 376 483 IPR036390 -
Seca9g06227 729 Gene3D Vaccinia Virus protein VP39 482 729 IPR029063 -
Seca9g06227 729 CDD AdoMet_MTases 568 661 - -
Seca9g06227 729 FunFam Uncharacterized protein 480 729 - -
Seca9g06227 729 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Seca9g06227 729 Pfam O-methyltransferase domain 503 709 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06227 Seca-Chr9 178441272 178454601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06227 367 715 Monolignol Biosynthesis Gene Families AT5G54160 47.009 6.31e-100 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06227 - - atri:130806785 538.11