Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06212 ATGGCTGCTCAACTCAATTTTGTAGTTGGATCTCATGTTTGGATTGAGGACTCAGATGAAGCTTGGTTAGATGGAGAAATCCTAGAAACTAAAGATGAAGAGATCACAGTTAACTGCGAATCAGGCACCAGGGTTGTGAGCAAAACATCTAATATCTATCCCAAAGATCCTGAATTCCCACCTAACGGTGTGGAAGATATGACAAGGCTAGCATATTTGCATGAACCAGGAGTACTTCAAAATTTGCAAATTCGATATTCCAAAAATGAAATATATACATACACAGGAAATATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTATATGCCAATAGTACAATGGCACAATATAAAGGTGCTGCTTTTGGTGAGCAGAGCCCACATCCTTTTGCAATTGCAGGTTCTGCATATAGGAAGATGATAAATGAAGAAACAAGCCAAGCTATTTTAGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTCATGCATTATCTTGCCTTTTTGGGAGGGAGAGCAGTAACTGAGGGACGGTCTGTGGAGCAACAAGTTCTAGAGTCCAATCCTGTTTTAGAAGCATTTGGCAATGCAAAGACTGTCAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTGGAACGTTCCCGTGTCTGTCAAGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTACATGCTTTGTGCTGCACCACAAGAGGATGTTAATAGGTTGAAATTGGGAAATCCAAGAGAATTTCATTACCTTAATCAATCAAATTGTTATGAGCTGGATGGGGTGGATGATTCTAAGGAATACCTTGCAACTAGGAGAGCTATGGATGTTGTTGGGATCAACTCTGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCTGTACTTCATTTAGGAAACATTGAATTTGTCAAGGGAGCAGATGATGGAGAAGATTCCTCTGAACCCAAGGATGAACAATCTCGTTTCCACCTAAAAACTGCAGCTGAACTTTTGATGTGTGATGAAAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACCCGTGGTGAGGCCATAACAAAATCGCTTGATCCAAATGCTGCAGCTCTCAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTTGACAAGATTAACAACTCTATTGGGCAAGATCCAAATTCTAAGAAATTAATTGGGGTTTTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATTAATTTGACAAATGAGAAATTACAACAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAAGAATATACAAAGGAAGAAATTGATTGGAGTTACATAGAGTTCGTTGATAATCAAGATGTTCTTGATCTTATAGAGAAGAAACCTGGCGGTATTATTGCTCTTCTAGATGAGGCTTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACATTTAAAGACAATAAACGCTTCAACAAGCCGAAGTTGTCTCGTACGGACTTCACTGTCAACCACTATGCTGGTGATGTCACTTATCAAACTGAACTTTTCCTTGATAAAAACAAAGACTATGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCCAAGTGCTCCTTTGTTTCAGGGCTTTTCCCACCTTTACCTGAGGAAACTACCAAATCAACAAAGTTCTCTTCTGTAGCCACTCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACACTGAATGCTACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAGCCAGGGATATTCGAGAACAATAATATATTGCAACAGCTTCGATGCGGGGGAGTAATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCCACAAGAAAGAGTTTTGAGGAATTTGTTAAGCGGTTTAGTATCTTGGAACCTCATGTTTTGAAAGCATGCCCTGATGAGATGACGGCTTGCAAGAGGCTTCTAGATAAAGCGAACCTTGCAGATTATCAGGTTGGAAAGACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCGTGTCGTGCTGAGGTCTTAGGAAAATCCGCAAGCATTATTCAAAGAAAAGTTCGCACATATTTTTGTCAGAAACACTACAATTCATTACGATTTTCTGCCATAGAACTACAAAGGGTTGTTAAAGGACAACTTGCACGCCATCAGTATGAATGCATGAGAAGGGAAGCTGCTTCTTTGAAAATCCAGAAATACTTCCGCATGTATCTTTCCAAAAGTTCTTATAAAGATACTTATGTCGCAGCTATTTATATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGACCTTAGGTTCAGGAGGCGAACACAAGCTGCAATTGCAATTCAGGGTCACTACAGAGGCTATTTAGCTCGTACTTATTTCCGACAGCTAAAGAAAGCAACAATAGCTGTACAGTGTTCCTGGAGGAGAACACGTGCACGTAGAGAGCTTCGAAAGCTTAAAATGGCTGCTAAAGAAGCCAAGGCTCTAGAAGCTGCCAAAATTAATCTAGAAAAGCAAGTTGAAGAACTAACTTTGTGTCTACAAACAGAGAAGGAAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTACAAGAGATGGAGCTTCAATTCCAAGAAACTAAGACAATACTCATCCAAGAACGTGAGGATGCTAGAAAAGTAGAGGAGCTGGTTAATTCATTGGAAAAGAAAACTACACAGGAGTTTCCAGTTAATGTCACTGACAATGAACTAATCAATAAGCTTACTACAGAAAATGAACACCTTAAGTGTGTCATAATATCCAAAATTAATTTTTATTATGATGCTTTGCAGGATCTGGTTAATTCATTAGAAAAGAAAACTATGCAGGAGTTACCTGTTAATGTCAGTGACAATGAACAAATCAATAAGCTTACTGCAGAAAATGAACACCTTAAGGATCAGGTTAATTCATTGGAAAGGAAAATTGATGAAATGGAGAGGAAATACGAAGAAAGTAATAGACTTAGTGATGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATAATTGATCTAAAGACAAACATGCAGAGACTTGAAGAAAAAGTCTCTGACATGGAAACTGAGAATCAAGTTTTACGGCAGCAAGCCCTGTTGAGTTCATCATCTAAAAGAATGTCAGGGAAGTTTTCAGCTTCTGTAATTCCGCCTTCAGAAAATGGTCAACAGGCACCAGCTAGTTCTACACCAGCAAAAACATTTGGTTCAGAAACGTTAAGGAGATCTCAAATGGAGAGGCATCAAGAGAGTGTAGATGCTCTTTTCAAATGTGTGACCAAAGATCTTGGGTTCTCTGAAGGAAAACCTATTGCAGCATTTACAATTTATAACTGTCTGTTACATTGGAAATCTTTTGAAGCAGAAAAGACAAGTATATTTGATCGTCTTATTCAGCTAATTGGCTCTGCAATAGAGGATCAAGAAAATAATGATTGTATGGCTTATTGGTTGTCCAATACATCTACTTTGTTTTTCCACCTTCAGCGATGTCTAAGAGTACCTACAGCACGAAAACCTCCCACTCCAACATCATTTTTTGGGAGAGTGGCCCAGAGTTTCCGCTCATCTTCCAATAGTCTTTCCGGTAATGCACTTGATGTAGTGCAACAGGTCGATGCCAAGTATCCAGCTCTGCTTTTCAAACAACAACTTGCAGCTTATGTAGAAAAGATATATGGAATCATTAGAGAAAATTTGAAGAAAGATTTGTCACCTTTGCTTTCTTCTTGCATTCAGGCACACAAAACATCAAATGACAGCAGCCAACCAAATGGTTCTTGGCTCAGCATTACCGAATGCCTTAATAGAATTCTCAATATTCTAAAAGAAAATTATGTGCCTCAAATTCTAGTTCAGAGGTTATTTAATCAGATTTTTCAATACATCGATGCAGAAATCTTTAATAGCCTTCTTTCAGATAAAGAATGTTGCACATTTAACAATGGAGAATATGTAAAATCAGGATTGGCTGAATTAGAACTATGGTGTAATGAAGTAACAGAGGAGTACGCTGACTCATCTTTGGATGAACTCAAATATGTGACACAAGCAGTTAGATTCTTGGTTACACAACAAAAGGTTGGACTATCTTATGATGATCTTACAAATGACCTTTGCCCGGCCTTGAGTTCTCATCAACTTTATAGAATATCTACACTTTATGAGGATGACAATGACAAGGACAATACGCAGAGTGTATCACCAGATGTCACTACTAGATTGAAGCTTCTAATGACGGATGGTGAAGATGGTGATGACAAATCCTTCTTGTTGGAAGACAATTCAAGTCTCCCTATTATCGTTGAAGAGATTTCTAGTTCCCATAAAGATAAAACCGTTCCAAAAGTAAAACCTCCTGCAGAACTTCTTGAGAATGCATCCTTCCAATTTTTACATGATTATTATTAG 4629 0.3824 MAAQLNFVVGSHVWIEDSDEAWLDGEILETKDEEITVNCESGTRVVSKTSNIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQIRYSKNEIYTYTGNILIAVNPFQRLPHLYANSTMAQYKGAAFGEQSPHPFAIAGSAYRKMINEETSQAILVSGESGAGKTESTKMLMHYLAFLGGRAVTEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVNRLKLGNPREFHYLNQSNCYELDGVDDSKEYLATRRAMDVVGINSDEQDAIFRIVAAVLHLGNIEFVKGADDGEDSSEPKDEQSRFHLKTAAELLMCDEKSLEDSFCKRVMVTRGEAITKSLDPNAAALSRDALAKIVYSRLFDWIVDKINNSIGQDPNSKKLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAEKLYQTFKDNKRFNKPKLSRTDFTVNHYAGDVTYQTELFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLPEETTKSTKFSSVATQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNILQQLRCGGVMEAIRISCAGYPTRKSFEEFVKRFSILEPHVLKACPDEMTACKRLLDKANLADYQVGKTKVFLRAGQMAELDACRAEVLGKSASIIQRKVRTYFCQKHYNSLRFSAIELQRVVKGQLARHQYECMRREAASLKIQKYFRMYLSKSSYKDTYVAAIYIQTGMRGMAARNDLRFRRRTQAAIAIQGHYRGYLARTYFRQLKKATIAVQCSWRRTRARRELRKLKMAAKEAKALEAAKINLEKQVEELTLCLQTEKEMREAKTQENEKLQHALQEMELQFQETKTILIQEREDARKVEELVNSLEKKTTQEFPVNVTDNELINKLTTENEHLKCVIISKINFYYDALQDLVNSLEKKTMQELPVNVSDNEQINKLTAENEHLKDQVNSLERKIDEMERKYEESNRLSDERMNQIIETESKIIDLKTNMQRLEEKVSDMETENQVLRQQALLSSSSKRMSGKFSASVIPPSENGQQAPASSTPAKTFGSETLRRSQMERHQESVDALFKCVTKDLGFSEGKPIAAFTIYNCLLHWKSFEAEKTSIFDRLIQLIGSAIEDQENNDCMAYWLSNTSTLFFHLQRCLRVPTARKPPTPTSFFGRVAQSFRSSSNSLSGNALDVVQQVDAKYPALLFKQQLAAYVEKIYGIIRENLKKDLSPLLSSCIQAHKTSNDSSQPNGSWLSITECLNRILNILKENYVPQILVQRLFNQIFQYIDAEIFNSLLSDKECCTFNNGEYVKSGLAELELWCNEVTEEYADSSLDELKYVTQAVRFLVTQQKVGLSYDDLTNDLCPALSSHQLYRISTLYEDDNDKDNTQSVSPDVTTRLKLLMTDGEDGDDKSFLLEDNSSLPIIVEEISSSHKDKTVPKVKPPAELLENASFQFLHDYY. 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06212 1542 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 832 854 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 855 877 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 784 806 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 736 758 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 807 829 IPR000048 GO:0005515
Seca9g06212 1542 SMART iq_5 759 781 IPR000048 GO:0005515
Seca9g06212 1542 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 Coils Coil 1020 1103 - -
Seca9g06212 1542 Pfam DIL domain 1361 1464 IPR002710 -
Seca9g06212 1542 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Seca9g06212 1542 SMART MYSc_2a 56 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Seca9g06212 1542 FunFam unconventional myosin-Va 836 883 - -
Seca9g06212 1542 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Seca9g06212 1542 Pfam IQ calmodulin-binding motif 834 854 IPR000048 GO:0005515
Seca9g06212 1542 Pfam Myosin N-terminal SH3-like domain 10 49 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 FunFam Myosin heavy chain 252 307 - -
Seca9g06212 1542 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 ProSiteProfiles Dilute domain profile. 1201 1487 IPR002710 -
Seca9g06212 1542 Gene3D - 669 732 - -
Seca9g06212 1542 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Seca9g06212 1542 FunFam Class V myosin 441 582 - -
Seca9g06212 1542 SMART DIL_2 1360 1467 IPR002710 -
Seca9g06212 1542 ProSiteProfiles IQ motif profile. 811 837 IPR000048 GO:0005515
Seca9g06212 1542 CDD MYSc_Myo11 76 722 IPR036018 -
Seca9g06212 1542 PANTHER MYOSIN 54 837 - -
Seca9g06212 1542 CDD MyosinXI_CBD 1152 1509 IPR037975 GO:0007015
Seca9g06212 1542 FunFam Myosin 2 312 429 - -
Seca9g06212 1542 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Seca9g06212 1542 Gene3D Myosin VI head, motor domain, U50 subdomain 312 603 - -
Seca9g06212 1542 Gene3D - 252 310 - -
Seca9g06212 1542 Gene3D - 736 786 - -
Seca9g06212 1542 Gene3D - 836 885 - -
Seca9g06212 1542 Gene3D - 787 835 - -
Seca9g06212 1542 Gene3D - 441 625 - -
Seca9g06212 1542 MobiDBLite consensus disorder prediction 1116 1142 - -
Seca9g06212 1542 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 FunFam unconventional myosin-Va 787 835 - -
Seca9g06212 1542 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca9g06212 1542 Coils Coil 869 962 - -
Seca9g06212 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 788 IPR027417 -
Seca9g06212 1542 Gene3D Kinesin motor domain 65 664 IPR036961 -
Seca9g06212 1542 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06212 Seca-Chr9 178120606 178142093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06212 1 1539 Myosins gene family AT5G43900 62.032 0.0 1938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06212 K10357 - gmx:100788123 2419.81