Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06201 ATGTCAAGTTTTGAGGTGAGTGGAAAGGTGGTGGACAGAGTCGATTTGCTGAAGAAGAAGCATTGGTCAATGCGTTTGGACATTTGGCCCTTCACTATTCTATATGGCGTGTGGGTGTGGGTATGGGCATGGGCTATTCTTTTCAACAGCATAGATGCTGCTATCATCTTGGGAGCACTCGTTGCTCTTCACATCCTATTTTGTCTCTTCACCGTTTGGTCCGTTGATTTCAAATGTTTTGCACATTATAGCAAGGTTCAAAATATTCAGCAGGCAGATTCTTGCAAGATAACTCCAACAAAGTTTTCGGGTTCTAAACAAGTTCTTCCGCTTCATTATGTAAGTATAATTGTATATTATTCTGTAGGAGTGGATATGGAAGAGATTTACTTCGATTTTAGAAAGCAACGTTTTGTGTATTCAAAGGAGAAGGGAACTTTTTGCAAACTTTCTTACCCTACCAAGGAAACATTTGGATATTACCTCAAAAGTAGAGGCCATGGCTCTGAAGCTAAAGTTCTTGCTGCCACTAACAAATGGGGGCGGAATGTATTTGATTATCCCAAGCCAACTTTTCAGAAATTGATGAAAGAGCACTGCATGGAGCCATTTTTCATATTTCAGGTGTTTTGTATGGGTCTGTGGTGTTTGGATGAATACTGGTATTATAGTTTGTTCACCTTATTTATGCTGCTTGTGGTTGAGTCCACAATGGCAAAAAGTCGGTTGAAAACTTTAACTGAGTTAAGACGTGTTAGAGTGGTTGCTCAGATCCTAATGGTACATCGCTGTGGCAAGTATGTTATCTCATCTCATTGTTATGCATATTTGGGTTTAAAACTTTTGCCTGGGGATGTTGTCTCTATAGGTCGTGGAGAGAAGTCTGTACCTGCAGATATGCTTATATTGGCTGGGAGTGCCATTGTGAATGAAGCTATTCTCACAGGTGAATCTACTCCTCAATGGAAGATTCCTATTGCCGGTAAGGGGATAGAGGAGAAGTTGTCAGCAAAGCGAGATAAAGGCCATGTTTTATTTGGTGGAACTATGATATTGCAGCATACTCCAGATAAGAACTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGCTGTCTTGAAAACGGGATTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAAAAAGGGTGACCGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTATGTGCTTATTAAGGGGCTACAAGATCCTTCAAGGAGAAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACCTCTGTGATACCAGTTGAATTGCCAATGGAATTGTCAATAGCTGTTAATAATTCTCTGATTGCACTGGCACGACGTGGAATTTTTTGCACAGAACCTTTCCGAGTACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAGTTTTCAGGAGTTGTTGGGTTGTCAGGAACTACTGATTTGGAATCTGATATGAGTAGAGTATCTGTGCGAACATTAGAAATCCTGGCTTCTTGCCATTCATTAGTATTTGTTCAGAATAAGCTGATTGGTGATCCTCTTGAGAAGGCTGCCCTTAAGGGAATTGACTGGAATTATAAATCTGATGAGAAGTCTGTTCCAAAAAAGGGAAATGCCCATCCTGTCCAAATTGTTCAGCGGTACCATTTTTCATCTCACTTAAAACGAATGACAGTTGTTGCACGGATTGAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATACAAGAAAGACTCACTGATATACCACCATCATATGTTGAGACCTACAAAAAATATACACGTCAAGGATCTCGTGTTCTTGCTCTGGCATACAAATCTCTTCCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGTGGAGAGTGGACTTACTTTTGCAGGTTTTGCGGTATTTAATTGTCCCATAAGATCAGATTCAGGCACTGTATTATATGAATTGAAAGGATCTTCGCATGATTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACATTAATCCTTTCCCCAGCAAGTAATGGTGAAGGATACAATTGGGTATCCCCTGATGAGACTGAAACCATTTGCTACAGTGAGAAAAAGGTTCAATCTTTGGCAGAGACTCATGATTTGTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCTTGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTTCTCCTGAGCATAAAGAACTAATCATGACCACTTTCAAAACATTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCTCTTCTGAATGTAATGCATCAAACCCAAAGTGGAAACTCCTCTTCAGATTCATCTGGGGAAGAACGTTCAAAATCTGTCAAGCAAAAGAAATCTAGGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCACAATTGGAGAAGTCACTTCAAAAGCCAAAGTTGCTTCAAGATCAGATTCAACCAGCCATTCATCTGTTAACCATGTTGAGATACAACAACAGAAGCTGAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTGGTGCTCCTATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACCGCAAAGCATGCATCTGTTGTTCCAACCACTGACATAATTCGTCAAGGTCGGAGTACCTTAGTGACAACCCTCCAGATGTTTAAAATTCTTGGCCTCAATTGCCTTGCTACTGCATATATGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATTTACAAGCCACAATAAGGGATATGTTTACTGCTGCATTTTTCTTCTTCATATCAAATCCACGCCCTCTTCCCACTCTCTCAGCTGAACGCCCTCACACTAACATTTTTTGTGCTTATGTCTTCCTTTCACTCTTGGGACAGTTTTCTATTCATCTGTTTTTTCTGACATCATCTGTTAGAGAAGCTGGAAAATACATGCCAGATGAATGCATTGAACCAGATTCAGATTTTCATCCCAACCTGGTAAATACAGTTTCCTACATGGTTAGCATGATCATTCAGGTGGCAACATTTGCTGTGAACTATATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCCTTCTTGTATGCCCTTGTTGCTGCTGTTGGTTTCTTCACTGTTATCACATCTGATCTCTTCAGGGACTTGGATGACTGGTTGAAGTTGGTGTCATTGCCTCCAGGTCTGAGGGATAAACTATTGATTTGGGCGTTTCTAATGTTTTCTGTATGCTATTCATGGGAGAGGTTTTTGAGGTGGACCTTCCCTGGTAATGCTAAGATCCCAGTTTGGAAGGAGCCTCAACAAGTTGCTCTATCTAATTTAGAAAAGGAAAAACGGCTCTAA 3579 0.4082 MSSFEVSGKVVDRVDLLKKKHWSMRLDIWPFTILYGVWVWVWAWAILFNSIDAAIILGALVALHILFCLFTVWSVDFKCFAHYSKVQNIQQADSCKITPTKFSGSKQVLPLHYVSIIVYYSVGVDMEEIYFDFRKQRFVYSKEKGTFCKLSYPTKETFGYYLKSRGHGSEAKVLAATNKWGRNVFDYPKPTFQKLMKEHCMEPFFIFQVFCMGLWCLDEYWYYSLFTLFMLLVVESTMAKSRLKTLTELRRVRVVAQILMVHRCGKYVISSHCYAYLGLKLLPGDVVSIGRGEKSVPADMLILAGSAIVNEAILTGESTPQWKIPIAGKGIEEKLSAKRDKGHVLFGGTMILQHTPDKNFPLKTPDGGCLAAVLKTGFETSQGKLMRTILFSTKRVTANSWESGFFILFLVVFALIAAGYVLIKGLQDPSRRKYKLILSCSLIVTSVIPVELPMELSIAVNNSLIALARRGIFCTEPFRVPFAGKVDICCFDKTGTLTSDDMEFSGVVGLSGTTDLESDMSRVSVRTLEILASCHSLVFVQNKLIGDPLEKAALKGIDWNYKSDEKSVPKKGNAHPVQIVQRYHFSSHLKRMTVVARIEEEFFAFVKGAPEIIQERLTDIPPSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARSLDRDIVESGLTFAGFAVFNCPIRSDSGTVLYELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILSPASNGEGYNWVSPDETETICYSEKKVQSLAETHDLCVGGDCIEMLQQTSAHLLVIPHVKVFARVSPEHKELIMTTFKTLGRVTLMCGDGTNDVGALKQAHVGVALLNVMHQTQSGNSSSDSSGEERSKSVKQKKSRPALETSGKTVSTIGEVTSKAKVASRSDSTSHSSVNHVEIQQQKLKKMIDELNEEGDGGAPIVKLGDASMASPFTAKHASVVPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYMLSVMYLDGVKLGDLQATIRDMFTAAFFFFISNPRPLPTLSAERPHTNIFCAYVFLSLLGQFSIHLFFLTSSVREAGKYMPDECIEPDSDFHPNLVNTVSYMVSMIIQVATFAVNYMGHPFNQSIPENKPFLYALVAAVGFFTVITSDLFRDLDDWLKLVSLPPGLRDKLLIWAFLMFSVCYSWERFLRWTFPGNAKIPVWKEPQQVALSNLEKEKRL. 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06201 1192 FunFam Cation-transporting ATPase 671 846 - -
Seca9g06201 1192 SUPERFAMILY HAD-like 485 832 IPR036412 -
Seca9g06201 1192 Pfam E1-E2 ATPase 281 470 - -
Seca9g06201 1192 SFLD C1.7: P-type atpase like 471 953 - -
Seca9g06201 1192 SUPERFAMILY Calcium ATPase, transduction domain A 280 389 IPR008250 -
Seca9g06201 1192 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Seca9g06201 1192 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Seca9g06201 1192 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Seca9g06201 1192 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Seca9g06201 1192 MobiDBLite consensus disorder prediction 864 897 - -
Seca9g06201 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 1167 IPR023298 -
Seca9g06201 1192 CDD P-type_ATPase_cation 172 1105 IPR047820 -
Seca9g06201 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1166 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca9g06201 1192 Pfam Cation transport ATPase (P-type) 541 619 - -
Seca9g06201 1192 FunFam Cation-transporting ATPase 486 670 - -
Seca9g06201 1192 Coils Coil 1185 1192 - -
Seca9g06201 1192 MobiDBLite consensus disorder prediction 849 863 - -
Seca9g06201 1192 NCBIfam HAD-IC family P-type ATPase 782 831 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca9g06201 1192 NCBIfam HAD-IC family P-type ATPase 405 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca9g06201 1192 SFLD p-type atpase 471 953 IPR044492 -
Seca9g06201 1192 Coils Coil 895 915 - -
Seca9g06201 1192 MobiDBLite consensus disorder prediction 837 897 - -
Seca9g06201 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 680 IPR023299 GO:0000166
Seca9g06201 1192 FunFam Cation-transporting ATPase 228 390 - -
Seca9g06201 1192 Gene3D - 671 848 IPR023214 -
Seca9g06201 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 492 498 IPR018303 -
Seca9g06201 1192 Gene3D - 485 670 IPR023299 GO:0000166
Seca9g06201 1192 Gene3D - 276 390 - -
Seca9g06201 1192 NCBIfam P-type ATPase of unknown pump specificity (type V) 49 1147 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06201 Seca-Chr9 177812033 177825666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06201 1 1192 Primary Pumps ATPases AT5G23630 71.774 0.0 1759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06201 K14950 - gmx:100789385 1945.24