Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06197 ATGAGAAGTAGAAAATATACATATCATGAATTTGAGGCTCTGGCAAACAAGGCATTTTTCAGAAGATTTTGCAGTTCTGAAGGTTTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGTATGAGATGGCACATGGAGAAAAGGGAACAGTTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCAAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTACATCATGTGTATTGCAATAAGATTTTAGCAAAACATGGAGAGGATGGAGCTTTCAAATTTCTTGCACATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATTCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGAGATTGGTTTCCACTTGGGGCTGCAGCTACCAAACGATATGCACATCTCAGAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGGTTTACAAGTCCTCAAAAGTCAAAAGTTCCAAGAACAAACCAGAAGACACAACATCTTATTATACTATTGTATTGTCTTTCTTGCATCTTATGCAATTTTATAAGACATCCCTTTTGCGGCTGAACAGTTCAAGAAAGTTATCAAGCTCTTCAATTACATTAGGTTCTCAGATATGCAACCTCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTCCATGATATTGCTCCACAGACTTGTTTATGTGGAGGGAAATATACTATTTTCAAGAGGAATGACTTGTTGGCACTGGAAGATGCTGCCACTGCCAAAAGTTTTCAACAGCAAAAGGAATGCCTTGAAATGTTATCTCAATCAAATATATTCTCCTATAACAGAAATGAATGCATCAAAGATCTCAAGCAGAATAATCCTTGGCATGAAGAAAGAAGTCCCAGAAGAAGTGCTAATTCTGTTGGGGCAGCATCGAAACTGAAAAGAAGGGTAGGAGACAACATCAAGCACAATATTGAAAAGAATAAAAAAACAACAATGAAGCATTATAGAAACAATGGACCTCCATCAGTAATAAGTACCAAAAGACCATGA 1407 0.3838 MRSRKYTYHEFEALANKAFFRRFCSSEGFSSSYVEKEFWYEMAHGEKGTVEYGVNVEGTAFSCDPNDRLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLHHVYCNKILAKHGEDGAFKFLAHKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRAYHSGFSHGFNCGEAVNFAIGDWFPLGAAATKRYAHLRMLPIIPYEELLCKEAMLVYKSSKVKSSKNKPEDTTSYYTIVLSFLHLMQFYKTSLLRLNSSRKLSSSSITLGSQICNLCHRDCYVAYLLCKYCYSHPICLFHDIAPQTCLCGGKYTIFKRNDLLALEDAATAKSFQQQKECLEMLSQSNIFSYNRNECIKDLKQNNPWHEERSPRRSANSVGAASKLKRRVGDNIKHNIEKNKKTTMKHYRNNGPPSVISTKRP. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06197 468 SMART cupin_9 68 241 IPR003347 -
Seca9g06197 468 MobiDBLite consensus disorder prediction 453 468 - -
Seca9g06197 468 MobiDBLite consensus disorder prediction 433 451 - -
Seca9g06197 468 SUPERFAMILY Clavaminate synthase-like 70 258 - -
Seca9g06197 468 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 432 - -
Seca9g06197 468 Pfam JmjC domain, hydroxylase 101 224 IPR003347 -
Seca9g06197 468 Gene3D Cupin 1 285 - -
Seca9g06197 468 MobiDBLite consensus disorder prediction 409 468 - -
Seca9g06197 468 ProSiteProfiles JmjC domain profile. 68 241 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06197 Seca-Chr9 177781988 177787026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06197 68 255 C2H2 Transcription Factor Family AT5G04240 46.809 7.24e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca9g06197 JmjC 3.7e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06197 - - cam:101502558 721.079