Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06196 ATGGGACGTGGAAAGATAGAGATAAAGAGGATTGAGAACACAACGACAAGGCAAGTGACATTCTCGAAGAGAAGAACAGGACTAATCAAGAAGACTCATGAACTTTCTGTGCTTTGTGATGCTCAGATCGGACTCATCATCTTCTCCACCACTGGCAAGATGTTCCAGTACTGCAGTGAACCCTTTAGGATGGAGCAGATCATAGAAAAGTATCAGAGAGCTACAGGAGCTCGCATGATTGAACGTGATCACCCCAGGGTATATGATGAATTGTTCCGTGACATGGCAATGCTGAGGCAGGAAACTCTTCGTCTTGAATTGGGGATTCAACGGTATCTTGGAGAGGACATGAGCTGTTTACAGTATGAGGATTTGACTAAGCTTGAACAAGAATTGGAGAACTCTGTTGCTAAAGTTCGAAACCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAGAGAATCTTGGAAGATGAAAACAGCAATTTGTCCAACTGGGAGCAGCGGGCAGTGTTGGAGTTTCAGAAGGCAGCAGTGGAAGCAAATAACAAAGCAATGGATCATCACTTTCCATTCTTTGAAGAGCAACCTATCCTTCAACTTGCAGCCCCTGTTCTTCCTCATCAACTTCACCACCCTTATCTTCAGCTGGCTCAGCCCAATATCCATCATGACCCTGCTCTCACCCCTGACCCTTAA 714 0.4538 MGRGKIEIKRIENTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSTTGKMFQYCSEPFRMEQIIEKYQRATGARMIERDHPRVYDELFRDMAMLRQETLRLELGIQRYLGEDMSCLQYEDLTKLEQELENSVAKVRNRQNELLQQQMENLRRKERILEDENSNLSNWEQRAVLEFQKAAVEANNKAMDHHFPFFEEQPILQLAAPVLPHQLHHPYLQLAQPNIHHDPALTPDP. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06196 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Seca9g06196 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Seca9g06196 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g06196 237 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g06196 237 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Seca9g06196 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g06196 237 Coils Coil 122 174 - -
Seca9g06196 237 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Seca9g06196 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06196 Seca-Chr9 177756806 177764891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06196 1 236 MADS-box Gene Family AT5G23260 47.104 6.00e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g06196 K-box 4.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06196 - - gmx:100783876 302.367