Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06180 ATGTCTAACTGTGAAGGAACAACAACAACAACTAACGCCGTTTCCATGACGGAGCCACAGCCCGCAACCACAATAACAACAACTCACCAGCAGCAGCGAAACAATGACAATCAAAATATTTTATCCGTCAAGAAACCGCCGTCTAAGGACCGTCACAGCAAAGTGGACGGTCGTGGACGCCGCATTCGGATGCCAATTATATGCGCCGCACGTGTCTTCCAGTTGACACGTGAGCTTGGCCACAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGTCAGGCTGAGCCATCCATCATCGCCGCCACCGGAACCGGCACCACTCCCGCCTCTTTCTCCACACTCTCCGACCACAAGCCTTTCCTCCCTCCTTCTCCTTTCATCCTCGGAAAACGAATACGCACTGAACATGACGCTCCCAAAGACGACGCCGTTTCACTCGTCGCACCTTCCGCTCCTGCTGCTCTCTGGGCGCTTCCTGCCAGGCCGGACTTCGGCCAGGTCTGGAGCTTCGCCGCCGCTGGAGCACCACCGGAACTCATTTCGCCATCGCCGCAACAGCAACAACAACAGCATGGTTCGTTGTTTCATCATCAGCAGCATGCCGCCATGGGAGAAGCTTCGGCGGCGAGGCTGGGGAATTACCTGCCAGGACATCTGAATTTGCTGGCTTCGTTGTCCGGCGGCCACGGGAATTCCGGCCGGCGAGACGACGAGCCTCGTTGA 726 0.5716 MSNCEGTTTTTNAVSMTEPQPATTITTTHQQQRNNDNQNILSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTLSDHKPFLPPSPFILGKRIRTEHDAPKDDAVSLVAPSAPAALWALPARPDFGQVWSFAAAGAPPELISPSPQQQQQQHGSLFHHQQHAAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDDEPR. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06180 241 ProSiteProfiles TCP domain profile. 48 102 IPR017887 -
Seca9g06180 241 MobiDBLite consensus disorder prediction 1 58 - -
Seca9g06180 241 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 213 IPR005333 GO:0003700
Seca9g06180 241 Pfam TCP family transcription factor 48 118 IPR017887 -
Seca9g06180 241 MobiDBLite consensus disorder prediction 1 44 - -
Seca9g06180 241 MobiDBLite consensus disorder prediction 181 197 - -
Seca9g06180 241 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06180 Seca-Chr9 177451109 177451834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06180 36 241 TCP Transcription Factor Family AT5G23280 65.502 7.34e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca9g06180 TCP 8.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06180 K16221 - gmx:100782271 300.827