Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06167 ATGCCCATGGCGAACGTGGTAAGGATAATGCGAAGGGCTCTTCCAGCGCACGCTAAGATCTCAGATGATGCAAAGGAAACAATGCAAGACTGTGTGTCTGAGTTCATCAGTTTCATTACCGATGAAGCCAATGATCGGTGCAAGCGTGAGCATAAGAAGACAGTGACTCCAGAGGATGTGATTTGGAGGCAAATGGCTGAGTCGAAGGAACAGAAGGAGCAGAACATGCCGATGTCGAACGTGGTAAGGATAATGCGAAGGGCTCTTCCAGCGGACGCTAAGATCTCAGACGATGCAAAGGAAACAATGCAAGACTGTGTGTCTGAGTTCATCAGTTTCATTACCGATGAAGCCAATGATCGGTGCAAGAGTGAGCAGAGGAAGACAGTGACTCCAGAGGATGTGATTTGTGCATTAGGGAATCTTGGTTATGATGATTATGTTCAACCTCTTTCCCTTTACCTTCAAAGGTACCGTGAGATTGCAGGAGTTCCCGCTTATGTTAGGCGGCGCAACCCTGGTTTTCTGAATGTCATGCCTCCTCCTCCTCCACCACCACAACCACAACCACAACCACCTCCTGGTTTTTATGGTTATTATGGTTATGGTGGACCCATGCTTGAGGTTGACCCATCGCAACAGACACTCACCCATGCTTCTGCTTCTGTTTCTGCTGTTGCCTCTGCCTCTGCCTCTGCCTCAGGCTCTGGCTCTTCTGTTGCCACCTTTGATTCTTTACCTGATGATCACCTTAAAGGTGACCCCAAGTGA 771 0.4864 MPMANVVRIMRRALPAHAKISDDAKETMQDCVSEFISFITDEANDRCKREHKKTVTPEDVIWRQMAESKEQKEQNMPMSNVVRIMRRALPADAKISDDAKETMQDCVSEFISFITDEANDRCKSEQRKTVTPEDVICALGNLGYDDYVQPLSLYLQRYREIAGVPAYVRRRNPGFLNVMPPPPPPPQPQPQPPPGFYGYYGYGGPMLEVDPSQQTLTHASASVSAVASASASASGSGSSVATFDSLPDDHLKGDPK. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06167 256 Gene3D Histone, subunit A 63 171 IPR009072 GO:0046982
Seca9g06167 256 SUPERFAMILY Histone-fold 1 62 IPR009072 GO:0046982
Seca9g06167 256 MobiDBLite consensus disorder prediction 178 199 - -
Seca9g06167 256 PRINTS CCAAT-binding transcription factor subunit A signature 141 159 - -
Seca9g06167 256 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Seca9g06167 256 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Seca9g06167 256 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 67 211 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca9g06167 256 MobiDBLite consensus disorder prediction 178 195 - -
Seca9g06167 256 MobiDBLite consensus disorder prediction 232 256 - -
Seca9g06167 256 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 62 IPR003958 -
Seca9g06167 256 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 75 139 IPR003958 -
Seca9g06167 256 Gene3D Histone, subunit A 1 62 IPR009072 GO:0046982
Seca9g06167 256 SUPERFAMILY Histone-fold 73 163 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06167 Seca-Chr9 177104697 177114344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06167 1 62 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.806 1.63e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca9g06167 CBFD_NFYB_HMF 6.6e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06167 K08065 - gmx:100811633 149.058