Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06166 ATGGCTGGGTTGAGGGAACAGGACCAGTTCATGCCGATAGCAAACGTGATAAGGATAATGCGAAGGATTCTTCCAGCGCACGCTAAGATCTCAGATGATGCAAAGGAAACAATGCAAGACTGTGTGTCTGAGTTCATCAGTTTCATCACCTCTGAAGCCAATGAGCGGTGCCAGCGTGAGCAGAGGAAGACAGTTACTGCAGAGGATGTGATTTGGGCAATGGGGAAGCTTGGTTTTGATGATTATATTCAACCTCTCTCCCTTTACCTTCAAAAGTACCGTGACAGTGAAGGAGAACCCGCTTTTGCTAGGCGCAACCCTGCTCCTCTCAATGTGATGCCTCCTCCACCACCACCACCACAACCACAGCCACAGCCACAACCACCTTCTGCTGGTTTTTATGGTTATTATGGATTTGGACCAATGAATGACTTTGACCCATCGCAAGGGTTCTACAGGGATGATGCTTCTGCTTCTGCTGTTGGCTCTGCATCTGCATCTGCATCTGCCTCTGCCTCAGGCTCTTCTGTTGCCACCTTTGGTTCTTTTCCTCACCTTAAAGGTGACCCCATGTGA 576 0.4913 MAGLREQDQFMPIANVIRIMRRILPAHAKISDDAKETMQDCVSEFISFITSEANERCQREQRKTVTAEDVIWAMGKLGFDDYIQPLSLYLQKYRDSEGEPAFARRNPAPLNVMPPPPPPPQPQPQPQPPSAGFYGYYGFGPMNDFDPSQGFYRDDASASAVGSASASASASASGSSVATFGSFPHLKGDPM. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06166 191 MobiDBLite consensus disorder prediction 160 180 - -
Seca9g06166 191 FunFam Nuclear transcription factor Y subunit B-6 1 112 - -
Seca9g06166 191 MobiDBLite consensus disorder prediction 147 191 - -
Seca9g06166 191 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca9g06166 191 Gene3D Histone, subunit A 2 108 IPR009072 GO:0046982
Seca9g06166 191 MobiDBLite consensus disorder prediction 109 129 - -
Seca9g06166 191 MobiDBLite consensus disorder prediction 100 133 - -
Seca9g06166 191 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 74 IPR003958 -
Seca9g06166 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca9g06166 191 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Seca9g06166 191 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Seca9g06166 191 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Seca9g06166 191 SUPERFAMILY Histone-fold 7 110 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06166 Seca-Chr9 177067268 177067843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06166 4 99 CCAAT-HAP3 Transcription Factor Family AT5G47670 83.333 6.31e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca9g06166 CBFD_NFYB_HMF 8.8e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06166 K08065 - gmx:100811633 216.853